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Table 3 Genes altered in their coding sequences by homozygous structural variants in ‘Sultanina’ genome

From: Whole genome comparison between table and wine grapes reveals a comprehensive catalog of structural variants

Variant type Deletions Insertions Number of genes
Codon-change codon 127 128 250
Codon 243 267 489
Exon deleted 45 - 45
Frame shift 709 797 1,285
Splice site acceptor 89 33 121
Splice site donor 81 27 107
Start lost 5 - 5
Stop gained - 62 60
Stop lost 9 - 9
  1. Variant types produced by deletions or insertions were classified according to their effect in the coding region. The total number of genes affected by INDELs is shown in the third column. As it can be seen, some genes contain more than one event.