Whole genome comparison between table and wine grapes reveals a comprehensive catalog of structural variants

BMC Plant Biology

Table 3 Genes altered in their coding sequences by homozygous structural variants in ‘Sultanina’ genome

Variant type	Deletions	Insertions	Number of genes
Codon-change codon	127	128	250
Codon	243	267	489
Exon deleted	45	-	45
Frame shift	709	797	1,285
Splice site acceptor	89	33	121
Splice site donor	81	27	107
Start lost	5	-	5
Stop gained	-	62	60
Stop lost	9	-	9

Variant types produced by deletions or insertions were classified according to their effect in the coding region. The total number of genes affected by INDELs is shown in the third column. As it can be seen, some genes contain more than one event.

ISSN: 1471-2229