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Table 2 Relative abundance of repetitive elements found within long structural variants in ‘Sultanina’ genome

From: Whole genome comparison between table and wine grapes reveals a comprehensive catalog of structural variants

Repeat elements

Heterozygous (%)

Homozygous (%)

Gypsy

58.2

39.9

Copia

23.8

28.7

VLINE

3.8

9.5

ATrich

4.1

7.8

MUDR

2.9

3.9

Total

92.7

89.9

  1. Classified repetitive elements were annotated within structural variants and the five most abundant are shown. These repetitive elements account for around 90% or more of the total elements. Among the heterozygous and homozygous groups the retrotransposable elements are the more abundant ones. The percentage was estimated as described in Additional file 13: Figure S5 and Methods.
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BMC Plant Biology

ISSN: 1471-2229

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