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Table 1 Overall assembly statistics and mRNA recovery

From: Whole genome comparison between table and wine grapes reveals a comprehensive catalog of structural variants

 

Assembly features

Number of contigs

63,028

Contig N50kb

14.8

Contig sizeMb

413.1

Number of scaffolds

17,951

Scaffold N50kb

78.0

Scaffold sizeMb

466.7

mRNA recovery (%)

82.01

  1. The N50 of contigs and scaffolds was calculated by ordering all sequences, then adding the lengths from longest to shortest until the added length exceeded 50% of the total length of all sequences. The mRNA recovery was defined as the number of mRNA of the reference genome contained in a single scaffold with at least 70% of coverage and 95% of identity. The average identity was 99.1% with a standard deviation of 1.6%.
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BMC Plant Biology

ISSN: 1471-2229

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