Table 1 Selected miRNAs (including some as PHAS trigger) with differentially expression changes in response to co-infection of TYLCCNV and TYLCCNB in N. benthamiana

Conserved

miR160

↑7.6

Auxin response factor

[3, 8, 9]

ND

miR164

↑2.2

NAC domain protein

[3, 7, 9]

ND

miR169

↓2.0

CCAAT-binding transcription factor (CBF)

[3, 8]

ND

miR319

↓2.0

TCP/MYB

[8]

Yes

miR391

↓3.5

Putative TAS

[8]

Yes

miR396

↑2.4

LRR receptor-like serine/threonine-protein kinase, RLP/Pentatricopeptide repeat protein

[8]

Yes

miR397

↑3.5

Laccase

[8]

Yes

miR398

↑18.4

CSD; Zinc finger, LIM-type/Rhodanese-like

[8, 10]

Yes

miR482 /miR2118

↑11.0

NBS-LRR

[21]

Yes

[15, 18, 21]

miR827

↓3.1

AP2 domain-containing transcription factor/RCC1-like protein

Yes

miR4376

↓3.7

ACA

Yes

[22]

miR6020

↓2.0

Pentatricopeptide repeat/Glycosyl transferase

[20]

Yes

[20]

Novel

Nbe-miR2

↓5.9

RCC domain-containing protein

ND

Nbe-miR3

↓6.7

Not known

ND

Nbe-miR4

↓3.8

Not known

ND

Nbe-miR6

↑2.8

GH3 family protein

ND

Nbe-miR8

↑2.3

Heat shock protein binding protein

ND

Nbe-miR64

↑2.1

C2 membrane targeting protein

Yes

Nbe-miR70

↑2.1

Basic helix-loop-helix dimerisation region bHLH

ND

Nbe-miR84

↑3.4

Cyclic nucleotide gated channel

ND

Nbe-miR99

↑3.5

F-box family protein

Yes

Nbe-miR107

↑9.1

DNA repair protein radA

ND

Nbe-miR124

↑2.9

Lactoylglutathione lyase

ND

Nbe-miR129

↑2.1

Harpin-induced protein-like

ND

Nbe-miR134

↑2.8

CHP-rich zinc finger protein/F-box family protein

Yes

Nbe-miR142

↓2.0

Receptor like kinase, RLK

ND