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Table 3 List of duplicated microsatellites in the octoploid Holiday x Korona map

From: Genomic rearrangements and signatures of breeding in the allo-octoploid strawberry as revealed through an allele dose based SSR linkage map

Marker

HxK nr of distinct alleles

Mapped LGs

Pseudomolecules_v1.1_sign_hits

Transposable element (LTRharvest)

Inside gene sequence

Large gene family

Similarity of best_scaffold 4 k region

BFACT041

21

1,4

0,1,2,3,4,5,6,7

n

y

y

Fragaria x ananassa beta-1,3-glucanase (BG2-2) gene

BFACT048

17

1,2,3,4,5,7

2,3,4,5,6,7

y

y

y

Within intron of populus trichocarpa cytochrome P450 (CYP721)

CFVCT005

12

1,4,6

0,1,2,3,4,7

y

n

n

Not within region with apparant function

CFVCT008

6

4,5,6,7

0,1,2,3,4,5,6,7

n

y

y

Fragaria x ananassa beta-1,3-glucanase (BG2-2) gene, complete cds

CFVCT018

24

1,2,7

0,1,2,3,4,5,6,7

n

n

n

Not within region with apparant function

CFVCT023

12

5,7

7

n

n

n

Not within region with apparant function

CFVCT032

12

3,4,7

0,1,2,3,4,5,6

n

n

n

Not within region with apparant function

EMFn181

33

1,3,4,5,6,7

3,4,5,6

n

n

n

Not within region with apparant function

EMFn198

12

1,3,4,6

no hits

   

no scaffold

EMFn225

8

5,6

0,1,2,3,4,5,6,7

n

n

n

Not within region with apparant function

EMFn230

4

1,6

no hits

   

no scaffold

EMFv019

7

1,3

1

n

n

n

Not within region with apparant function

EMFv104

11

3,6

3,6

y

y

n

Within intron of ferredoxin-dependent glutamate synthase

EMFv142

10

2,4

3,4,7

n

y

y

Within intron of adiponectin receptor protein 1-like (LOC100777701), mRNA

EXP1A

14

4,7

3,5,6,7

n

y

y

Expansin (EXP2)

Fvi6B

14

3,6

6

n

y

y

Within intron of chromatin remodeling complex subunit (CHR923)

UDF004

7

3,5

3

n

y

n

Within intron of molybdopterin cofactor sulfurase (ABA3)

UDF033

14

1,2,3

3,4,7

y

y

n

Pyrus pyrifolia genes for F-box proteins and S2-RNase, complete cds, haplotype: S2

UDF056

5

2,3

4,6

y

n

n

Not within region with apparant function