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Table 1 Amplification efficiency of Fragaria vesca -derived SSR primer pairs

From: Genomic rearrangements and signatures of breeding in the allo-octoploid strawberry as revealed through an allele dose based SSR linkage map

Linkage group nr of vesca derived primer pairs Amplified alleles/total alleles Total vesca efficiency in %
LG1A 13 48/52 92
LG1B 6 20/24 83
LG1C 5 10/20 50
LG1D 5 8/20 40
LG2A 11 42/44 95
LG2B 7 24/28 86
LG2C 8 27/32 84
LG2D 8 27/32 84
LG3A 13 46/52 88
LG3B 13 34/52 65
LG3C 12 27/48 56
LG3D 12 21/48 44
LG4A 6 23/24 96
LG4B 7 24/28 86
LG4C 4 13/16 81
LG4D 5 16/20 80
LG5A 7 28/28 100
LG5B 9 33/36 92
LG5C 8 22/32 69
LG5D 7 19/28 68
LG6A 10 38/40 95
LG6B 12 33/48 69
LG6C 11 30/44 68
LG6D 11 28/44 59
LG7A 6 19/24 79
LG7B 6 14/24 58
LG7C 4 5/16 31
LG7D 5 5/20 25
  1. Differences in nr of primer pairs within a chromosome are caused by either heterologously amplifying primer pairs, or loci for which allele assignment was unclear (see footnote FigureĀ 2).