Genomic rearrangements and signatures of breeding in the allo-octoploid strawberry as revealed through an allele dose based SSR linkage map

Table 1 Amplification efficiency of Fragaria vesca -derived SSR primer pairs

Linkage group	nr of vesca derived primer pairs	Amplified alleles/total alleles	Total vesca efficiency in %
LG1A	13	48/52	92
LG1B	6	20/24	83
LG1C	5	10/20	50
LG1D	5	8/20	40
LG2A	11	42/44	95
LG2B	7	24/28	86
LG2C	8	27/32	84
LG2D	8	27/32	84
LG3A	13	46/52	88
LG3B	13	34/52	65
LG3C	12	27/48	56
LG3D	12	21/48	44
LG4A	6	23/24	96
LG4B	7	24/28	86
LG4C	4	13/16	81
LG4D	5	16/20	80
LG5A	7	28/28	100
LG5B	9	33/36	92
LG5C	8	22/32	69
LG5D	7	19/28	68
LG6A	10	38/40	95
LG6B	12	33/48	69
LG6C	11	30/44	68
LG6D	11	28/44	59
LG7A	6	19/24	79
LG7B	6	14/24	58
LG7C	4	5/16	31
LG7D	5	5/20	25

Differences in nr of primer pairs within a chromosome are caused by either heterologously amplifying primer pairs, or loci for which allele assignment was unclear (see footnote Figure 2).

ISSN: 1471-2229