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Table 5 Peach genes located in the two-LOD confidence interval of selected QTLs and other candidate genes

From: Quantitative trait loci affecting reproductive phenology in peach

QTL region

Peach model (gene)

Genomic location (Mb)

Blastp hit in Arabidopsis

E-value

Description

1b

ppa000228m

33.9

PKL

0

Chromatin remodelling factor PICKLE

 

ppa008143m

34.3

COL4

2×10-140

Zinc finger protein CONSTANS-LIKE 4

 

ppa003748m

34.8

HAB1

8×10-177

Protein phosphatase 2C

 

ppa006590m

35.0

HDA2

0

Histone deacetylase 2

 

ppa008979m

35.9

At5g67300

2×10-95

myb-related protein

 

ppa006503m

36.2

AREB1

3×10-121

ABA-responsive element binding protein 1

 

ppa000318m

37.0

EMF1

8×10-44

Embryonic flower 1

 

ppa013757m

37.6

FPF1

8×10-57

Flowering promoting factor 1

 

ppa000056m

39.8

EFS

0

Histone-lysine N-methyltransferase

 

ppa001566m

40.0

SWI3C

0

SWI/SNF complex subunit SWI3C

 

ppa005747m

40.8

HAM2

0

Histone acetyltransferase of the MYST family

 

ppa024363m

41.0

AREB3

3×10-45

ABA-responsive element binding protein 3

 

ppa012329m

46.0

At4g24440

3×10-68

Transcription initiation factor IIA subunit 2

 

ppa010714m (DAM6)

46.3

SVP

7×10-65

MADS-box protein

 

ppa010822m (DAM5)

46.4

SVP

1×10-62

MADS-box protein

 

ppa011123m (DAM4)

46.4

AGL24

2×10-60

MADS-box protein

3a

ppa020502m

0.1

CCR2

2×10-19

Glycine-rich protein

 

ppa004975m

0.1

SDG40

0

SET domain group 40

 

ppa000162m

1.2

HAC1

0

Histone acetyltransferase of the CBP family

 

ppa013609m

1.7

At1g54070

1×10-19

Dormancy/auxin associated family protein

 

ppa004252m

2.4

HAB1

0

Protein phosphatase 2C

 

ppa002515m

3.2

ABO5

0

Pentatricopeptide repeat-containing protein

4b

ppa010982m

10.4

ERF4

6×10-45

Ethylene responsive element binding factor 4

 

ppa022739m

10.5

SPL4

3×10-41

Squamosa promoter binding protein-like 4

 

ppa008301m

11.1

ANAC072

2×10-122

NAC domain-containing protein 72

 

ppa002986m

12.0

DFL1

0

Indole-3-acetic acid amido synthetase

6a

ppa003113m

3.8

EIL3

0

Ethylene-insensitive3-like 3

 

ppa001557m

6.8

ARF4

0

Auxin response factor 4

 

ppa002082m

7.1

ARF10

0

Auxin response factor 10

6b

ppa009583m

8.7

HDT3

3×10-44

Histone deacetylase 2C

 

ppa006053m

9.1

HDA9

0

Histone deacetylase 9

 

ppa007108m

11.6

HDA8

0

Histone deacetylase 8

 

ppa022266m

13.7

AREB3

2×10-59

ABA-responsive element binding protein 3

7b

ppa024294m

12.4

ATXR4

4×10-140

Histone-lysine N-methyltransferase

 

ppa026273m

13.4

At5g42560

1×10-74

ABA-responsive protein (TB2/DP1, HVA22)

 

ppa012369m

14.3

TFL1

7×10-93

Phosphatidylethanolamine-binding protein

 

ppa015643m

14.5

CBF2

1×10-48

C-repeat/DRE binding factor 2

 

ppa009356m

14.7

HDT3

6×10-57

Histone deacetylase 2C

 

ppa001213m

15.4

CLF

0

Histone-lysine N-methyltransferase

 

ppa002248m

15.6

ABA1

0

Zeaxanthin epoxidase

 

ppa012239m

16.4

At4g37220

7×10-25

Cold acclimation protein WCOR413 family

 

ppa001803m

16.7

DDM1

0

Chromatin remodelling factor