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Table 2 Coding information of the rubber tree mitochondrial genome

From: Assembly and analysis of a male sterile rubber tree mitochondrial genome reveals DNA rearrangement events and a novel transcript

Gene function

Gene name

Complex I

(2x)nad1[5], (2x)nad2[5], nad3, nad4[4], (2x)nad4L, nad5[5], (2x)nad6, (2x)nad7[5], (2x)nad9

Complex II

(2x)shd3, (2x)shd4

Complex III

(2x)cob

Complex IV

cox1[2], (2x)cox2[2], cox3

Complex V

(2x)atp1, (2x)atp4, (2x)atp6, (2x)atp8, atp9

Cytochrome-c biogenesis

(2x)ccmB, (2x)ccmC, ccmFc[2], ccmFn

SecY-independent transport

(2x)mttB

Ribosomal RNAs

5S rRNA, 18S rRNA, 26S rRNA

Ribosomal protein small subunit

rps1, rps3[2], (2x)rps4, rps12, rps13

Ribusomal protein large subunit

(2x)rpl5, (2x)rpl10, rpl16

Intron maturase

(3x)matR

Chloroplast transferred complete genes

(2x)4.5S rRNA, (2x)5S rRNA, 16S rRNA, (2x)psaA, (2x)ycf3[3]

Conserved Hypothetical genes

orf101, orf122, orf126, (2x)orf128, orf129, (2x)orf190

Transfer RNA

(2x)trnC-GCA, trnD-GUC, trnD-GUC-cp, (2x)trnE-UUC, (2x)trnF-GAA, trnG-GCC, (2x)trnH-GUG-cp, trnK-UUU, (2x)trnL-UAA[2], (4x)trnM-CAU, (2x)trnM-CAU-cp, (4x)trnN-GUU-cp, trnP-UGG, (2x)trnP-UGG-cp, trnQ-UUG, (2x)trnR-ACG-cp, trnS-GCT, (2x)trnS-TGA, trnV-GAC-cp, (2x)trnW-CCA-cp, (2x)trnY-GTA

Pseudogenes

rpl2, (2x)rps2, (2x)rps14, rps19

cp-derived gene fragment transfer

16S rRNA, 23S rRNA, atpE, ndhF, (2x)psaB, (2x)psbC, (2x)rpoA, rps12_3end, (2x)ycf1, (2x)ycf15, (2x)ycf2, ycf68

Lost gene (transferred to nucleus)

rps10[2]

  1. *Note: Bracketed numbers indicate copy number of each gene, square brackets indicate number of exons, chloroplast derived tRNAs have -cp appended to them.