Skip to main content

Table 2 Correlation analysis of cell wall genes in the elongating maize internode

From: Spatial gradients in cell wall composition and transcriptional profiles along elongating maize internodes

Genes

CesA10

CesA11

CesA13

At gene

Expect

At name

Cell wall metabolism

      

CesA10 (Q6UDF1)

1.00

0.91

0.89

At5g44030

0

AtCesA4

CesA11 (Q67BC8)

0.91

1.00

0.91

At4g18780

0

AtCesA8

CesA13 (Q67BC7)

0.97

0.89

1.00

At5g17420

0

AtCesA7

BK2 (A1DZD8)

0.90

0.96

0.88

At5g15630

0

AtIRX6

BK2 (A0EJ90)

0.95

0.97

0.90

At5g15630

0

AtIRX6

Glycosyltransferase (Q50HU5, GT43 family)

0.96

0.94

0.95

At5g67230

E-173

AtIRX14H

Glycosyltransferase (Q50HW1, GT43 family)

0.71

0.92

0.92

At2g37090

E-93

AtIRX9

3-β-glucuronosyltransferase-like (Q5QM25)

0.85

0.94

0.88

At1g27600

E-91

AtIRX9H

(1,3;1,4)-β-glucanase (Q7DLM1, GT17)

0.79

0.93

0.85

At4g16260

E-102

-

Lignin metabolism

      

PAL (Q7X720)

0.91

0.84

0.95

At2g37040

0

AtPAL1

Laccase (Q10ND7)

0.89

0.95

0.92

At5g60020

0

AtLAC17

Laccase (Q2PAJ0)

0.74

0.95

0.93

At5g60020

0

AtLAC17

O-methyltransferase (Q6VWG5)

0.90

0.94

0.89

At5g54160

E-116

AtOMT1

Caffeoyl CoA 3-O-methyltransferase (Q7XYW7)

0.90

0.94

0.85

At4g34050

E-118

AtCCoAOMT1

Caffeoyl CoA 3-O-methyltransferase (Q6VWH0)

0.91

0.96

0.88

At4g34050

E-104

AtCCoAOMT1

Cinnamyl alcohol dehydrogenase (O24562)

0.90

0.94

0.87

At3g19450

E-177

AtCAD4

4-coumarate coenzyme A ligase (Q6Q297)

0.93

0.92

0.87

At3g21240

0

At4CL2

Peroxidase P7X (Q9ZTS7)

0.72

0.91

0.76

At5g05340

E-82

-

Carboxylate oxidase (Q75IP9)

0.74

0.90

0.90

At1g17020

E-79

AtSRG1

Transcription factor and protein kinases

      

Nucellin-like aspartic protease (Q5Z6M6)

0.95

0.97

0.90

At1g49050

E-114

-

Putative blue copper protein (Q6Z7U7)

0.91

0.98

0.85

At1g49050

E-114

-

Cdc protein kinase-like (Q653F8)

0.83

0.96

0.88

At5g67210

E-62

-

LEM3 (Ligand-effect modulator 3)-like (Q653D8)

0.94

0.93

0.90

At1g79450

E-106

AtLEM3

NAM (Q5QMP4)

0.93

0.95

0.93

At4g28500

E-99

AtSND2

Knox (Q94LW3)

0.94

0.95

0.87

At1g62990

E-109

AtIRX11

BAG (Q5N9K2)

0.93

0.92

0.94

At3g51780

E-40

AtBAG4

POT family protein (Q2R726)

0.84

0.93

0.90

At1g27040

E-83

-

VP1/ABI3 (Q6Z3U3)

0.78

0.92

0.85

At4g32010

E-152

AtHSL1

MYB (Q0J3I9)

0.81

0.90

0.83

At5g67300

E-54

AtMYBR1

F-box (Q5VR67)

0.84

0.91

0.79

At2g26850

E-79

-

Protein kinase (Q2RBK1)

0.96

0.92

0.94

At1g56720

E-150

-

Putative NEP1-interacting protein (Q6Z2U9)

0.85

0.92

0.90

At1g74410

E-42

-

Serine/threonine-protein kinase SAPK3 (Q75V63)

0.88

0.91

0.92

At4g33950

E-142

AtOST1

PREG-like (Q6Z2N6)

0.78

0.90

0.79

At2g44740

E-62

AtCycP4;1

  1. Pearson correlation co-efficient (P-) values were calculated for the genes showing high correlations in transcription activities with secondary wall CesA10 (Q6UDF1), CesA11 (Q67BC8), and CesA13 (Q67BC7) genes. Arabidopsis genes (At) that are orthologous to the maize genes are identified in the right hand columns.