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Table 3 Differentially expressed genes in R. stricta discussed in the Results section

From: The temporal foliar transcriptome of the perennial C3 desert plant Rhazya stricta in its natural environment

ID Group Abv Description LogFC Apical Morning – Midday LogFC Apical Midday - Dusk LogFC Apical Dusk – Morning LogFC Mature Morning - Midday LogFC Mature Midday - Dusk LogFC Mature Dusk - Morning
17395 HS ACC oxidase 1 1-aminocyclopropane-1-carboxylate oxidase -1.92*** 1.02*** 0.89* -0.97*** -0.51ns 1.48***
4650 HS ACC oxidase 2 1-aminocyclopropane-1-carboxylate oxidase -2.72*** 2.14*** 0.58ns -3.82*** 1.05** 2.77***
11855 HS ACC1 1-aminocyclopropane-1-carboxylate synthase -0.58** -0.29ns 0.87** -1.27*** -0.22ns 1.48***
7628 HS ACC2 1-aminocyclopropane-1-carboxylate synthase -0.33ns -0.35ns 0.69** -0.39* -0.61*** 1.01***
22227 HS AOC Allene oxide cyclase -0.81*** 0.94*** -0.13ns -1.21*** 1.31*** -0.09ns
2272 HS AOS Allene oxide synthase -0.69ns -1.18ns 1.87* -2.21*** -0.38ns 2.59***
11383 HS ICS1 Isochorismate synthase 0.76ns 0.07ns -0.83ns 0.93* 0.41ns -1.35**
13155 HS ICS2 Isochorismate synthase 0.71ns 0.03ns -0.74ns 0.87* 0.39ns -1.26**
11166 HS IPT2 Isopentenyltransferase 0.90 -0.21ns -0.70** 0.48* -0.31ns -0.16ns
12704 HS NCED 9-cis-epoxycarotenoid dioxygenase 1.26 -2.56*** 1.30ns 0.56ns -3.39*** 2.83***
16795 HS OPR3 12-oxophytodienoate reductase 1.38 -0.54ns -0.83ns -0.03ns 0.07ns -0.04ns
10633 HS ZEP Zeaxanthin epoxidase 2.62 -2.13*** -0.50ns 2.26*** -2.75*** 0.50ns
14357 HS IPT Isopentenyltransferase 3.55 -2.14*** -1.41* 0.76ns -0.52ns -0.25ns
8521 TF CCA1 circadian clock associated1 -4.78 -3.80*** 8.58*** -3.94*** -5.43*** 9.37***
15403 TF CRF2a cytokinin response factor 2 -0.14 -0.45ns 0.59ns 1.94*** 0.11ns -2.05***
15603 TF CRF2b cytokinin response factor 2 -0.87** 0.84** 0.02ns -2.48*** 0.11ns 2.37***
15532 TF DREB2 dehydration response element binding factor 2 3.66*** -0.80ns -2.86*** 3.71*** -1.44*** -2.27***
10837 TF PRR5a pseudo response regulators 5 1.90*** -1.41*** -0.49ns 1.73*** -0.88*** -0.85**
9003 TF PRR5b pseudo response regulators 5 1.87*** -1.39*** -0.49ns 1.70*** -0.87** -0.83**
11103 TF PRR7a pseudo response regulators 7 3.48*** -1.05*** -2.43*** 2.89*** -0.72* -2.18***
7261 TF PRR7b pseudo response regulators 7 1.87*** -1.32*** -0.54ns 1.85*** -1.83*** -0.01ns
10590 TF RAP2.12a RAP2.12 -2.18*** 0.99*** 1.19*** -3.20*** 1.45*** 1.75***
16151 TF RAP2.12b RAP2.12 -2.18*** 1.00*** 1.18*** -3.24*** 1.50*** 1.74***
13680 TF RAP2.4a RAP2.4 -0.56* -0.67* 1.23*** -1.38*** -0.42ns 1.79***
6139 TF RAP2.4b RAP2.4 -1.25*** 0.61* 0.64ns -1.76*** -0.40ns 2.17***
7222 TF TOC1b timing of CAB expression1 0.33ns 0.08ns -0.41ns 0.07ns 0.40* -0.46ns
  1. Showing R. stricta contig identifier in first column, a code for section of results discussed (HS, hormone synthesis; TF, transcription factor) in second column, abbreviation (Abv) and description in third and fourth columns respectively. The remaining columns show the log(2) fold change between time points (from – to) within leaf type, along with FDR corrected significance test (<0.05 = *, <0.01 = **, <0.001 = ***, >0.05 ns).