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Table 3 Differentially expressed genes in R. stricta discussed in the Results section

From: The temporal foliar transcriptome of the perennial C3 desert plant Rhazya stricta in its natural environment

ID

Group

Abv

Description

LogFC Apical Morning – Midday

LogFC Apical Midday - Dusk

LogFC Apical Dusk – Morning

LogFC Mature Morning - Midday

LogFC Mature Midday - Dusk

LogFC Mature Dusk - Morning

17395

HS

ACC oxidase 1

1-aminocyclopropane-1-carboxylate oxidase

-1.92***

1.02***

0.89*

-0.97***

-0.51ns

1.48***

4650

HS

ACC oxidase 2

1-aminocyclopropane-1-carboxylate oxidase

-2.72***

2.14***

0.58ns

-3.82***

1.05**

2.77***

11855

HS

ACC1

1-aminocyclopropane-1-carboxylate synthase

-0.58**

-0.29ns

0.87**

-1.27***

-0.22ns

1.48***

7628

HS

ACC2

1-aminocyclopropane-1-carboxylate synthase

-0.33ns

-0.35ns

0.69**

-0.39*

-0.61***

1.01***

22227

HS

AOC

Allene oxide cyclase

-0.81***

0.94***

-0.13ns

-1.21***

1.31***

-0.09ns

2272

HS

AOS

Allene oxide synthase

-0.69ns

-1.18ns

1.87*

-2.21***

-0.38ns

2.59***

11383

HS

ICS1

Isochorismate synthase

0.76ns

0.07ns

-0.83ns

0.93*

0.41ns

-1.35**

13155

HS

ICS2

Isochorismate synthase

0.71ns

0.03ns

-0.74ns

0.87*

0.39ns

-1.26**

11166

HS

IPT2

Isopentenyltransferase

0.90

-0.21ns

-0.70**

0.48*

-0.31ns

-0.16ns

12704

HS

NCED

9-cis-epoxycarotenoid dioxygenase

1.26

-2.56***

1.30ns

0.56ns

-3.39***

2.83***

16795

HS

OPR3

12-oxophytodienoate reductase

1.38

-0.54ns

-0.83ns

-0.03ns

0.07ns

-0.04ns

10633

HS

ZEP

Zeaxanthin epoxidase

2.62

-2.13***

-0.50ns

2.26***

-2.75***

0.50ns

14357

HS

IPT

Isopentenyltransferase

3.55

-2.14***

-1.41*

0.76ns

-0.52ns

-0.25ns

8521

TF

CCA1

circadian clock associated1

-4.78

-3.80***

8.58***

-3.94***

-5.43***

9.37***

15403

TF

CRF2a

cytokinin response factor 2

-0.14

-0.45ns

0.59ns

1.94***

0.11ns

-2.05***

15603

TF

CRF2b

cytokinin response factor 2

-0.87**

0.84**

0.02ns

-2.48***

0.11ns

2.37***

15532

TF

DREB2

dehydration response element binding factor 2

3.66***

-0.80ns

-2.86***

3.71***

-1.44***

-2.27***

10837

TF

PRR5a

pseudo response regulators 5

1.90***

-1.41***

-0.49ns

1.73***

-0.88***

-0.85**

9003

TF

PRR5b

pseudo response regulators 5

1.87***

-1.39***

-0.49ns

1.70***

-0.87**

-0.83**

11103

TF

PRR7a

pseudo response regulators 7

3.48***

-1.05***

-2.43***

2.89***

-0.72*

-2.18***

7261

TF

PRR7b

pseudo response regulators 7

1.87***

-1.32***

-0.54ns

1.85***

-1.83***

-0.01ns

10590

TF

RAP2.12a

RAP2.12

-2.18***

0.99***

1.19***

-3.20***

1.45***

1.75***

16151

TF

RAP2.12b

RAP2.12

-2.18***

1.00***

1.18***

-3.24***

1.50***

1.74***

13680

TF

RAP2.4a

RAP2.4

-0.56*

-0.67*

1.23***

-1.38***

-0.42ns

1.79***

6139

TF

RAP2.4b

RAP2.4

-1.25***

0.61*

0.64ns

-1.76***

-0.40ns

2.17***

7222

TF

TOC1b

timing of CAB expression1

0.33ns

0.08ns

-0.41ns

0.07ns

0.40*

-0.46ns

  1. Showing R. stricta contig identifier in first column, a code for section of results discussed (HS, hormone synthesis; TF, transcription factor) in second column, abbreviation (Abv) and description in third and fourth columns respectively. The remaining columns show the log(2) fold change between time points (from – to) within leaf type, along with FDR corrected significance test (<0.05 = *, <0.01 = **, <0.001 = ***, >0.05 ns).