Table 3 Guide gene co-expression analysis using GME (Cit.23640.1.S1_s_at, Cit.7984.1.S1_s_at, Cit.7984.1.S1_at)
From: Annotation of gene function in citrus using gene expression information and co-expression networks
Dataset | Enriched GO BP | Symbol | Probesets | P1 | P2 | P3 |
|---|---|---|---|---|---|---|
Leaf | L-ascorbic acid biosynthesis (3.00E-03/ 1.90E-02/ 7.05E-05) | VTC2 | CIT.21052.1.S1_at | 144 | ns | ns |
VTC2 | CIT.21052.1.S1_x_at | 155 | ns | ns | ||
VTC1 | CIT.29407.1.S1_s_at | ns | 60 | 169 | ||
VTC4 | CIT.9252.1.S1_s_at | ns | ns | 154 | ||
Response to hormone stimulus (6.00E-03/ 2.00E-03/ 1.10E-02) | ACT3 | CIT.11614.1.S1_s_at | 30 | 68 | 103 | |
WES1 | CIT.26243.1.S1_at | 94 | ns | ns | ||
ERF13 | CIT.29675.1.S1_s_at | 88 | ns | ns | ||
VH1 | CIT.16607.1.S1_at | 15 | ns | 230 | ||
AHP1 | CIT.18186.1.S1_at | 155 | ns | ns | ||
SLR | CIT.13868.1.S1_at | 12 | 115 | 102 | ||
SLR | CIT.8972.1.S1_s_at | 68 | 10 | 4 | ||
ERF7 | CIT.14141.1.S1_s_at | 17 | 99 | 175 | ||
BZR1 | CIT.29783.1.S1_at | ns | 120 | ns | ||
ARF8 | CIT.26077.1.S1_at | ns | 141 | 179 | ||
BZR1 | CIT.29783.1.S1_s_at | ns | 178 | ns | ||
IAA9 | CIT.8966.1.S1_s_at | ns | 199 | ns | ||
Electron transport chain (6.00E-03/ 3.40E-02/ 7.05E-05) | NDHD | CIT.29311.1.S1_at | 53 | 118 | 71 | |
NDHD | CIT.6501.1.S1_at | 57 | 64 | 51 | ||
NDHF | CIT.29293.1.S1_at | 70 | ns | 107 | ||
PSBE | CIT.40088.1.S1_at | 27 | 139 | 89 | ||
nsD5B | CIT.33620.1.S1_at | ns | ns | 210 | ||
COX3 | CIT.18692.1.S1_at | ns | ns | 224 | ||
Fruit/Citrus | Cell wall modification (NA/ 1.60E-03/ 1.30E-03) (NA/ 7.60E-04/ 3.39E-05) | pectinesterase | Cit.13620.1.S1_at | ns | 16/55 | 27/20 |
pectinesterase | Cit.17421.1.S1_at | ns | 35/83 | 125/88 | ||
pectinesterase | Cit.18581.1.S1_s_at | ns | 115/88 | 191/51 | ||
PMEPCRA | CIT.9257.1.S1_s_at | ns | ns/82 | 158/47 | ||
EXPA5 | CIT.2093.1.S1_s_at | ns | 62 | 177 | ||
COB | CIT.9596.1.S1_s_at | ns | 153 | 202 | ||
EXPA4 | CIT.10687.1.S1_s_at | ns | 151 | ns | ||
pectinesterase | CIT.26012.1.S1_at | ns/213 | ns | ns/249 | ||
L-ascorbic acid recycling | MDAR | Cit.3318.1.S1_at | 181 | 198 | ns | |
Citrus | L-ascorbic acid recycling | DHAR1 | Cit.31710.1.S1_s_at | ns | 241 | ns |
DHAR3 | Cit.13490.1.S1_at | 303 | ns | ns | ||
DHAR3 | Cit.13490.1.S1_x_at | 203 | ns | ns | ||
MDAR | Cit.3318.1.S1_at | 181 | 198 | ns |