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Table 2 Guide gene co-expression analysis using LOB1 (Cit.35190.1.S1_at and Cit.37210.1.S1_at)

From: Annotation of gene function in citrus using gene expression information and co-expression networks

Dataset

Enriched GO BP

Symbol

Probesets

P1

P2

Citrus

Oxidative phophorylation (1.80E-02/2.20E-02)

ATP synthase

CIT.10573.1.S1_S_AT

ns

350

  

COX2

CIT.12767.1.S1_S_AT

227

ns

  

PPa1

CIT.15062.1.S1_AT

124

97

  

ATP synthase

CIT.30575.1.S1_S_AT

205

279

  

oxidoreductase

CIT.4015.1.S1_AT

310

ns

  

oxidoreductase

CIT.4015.1.S1_S_AT

229

245

Leaf/Stress

Cell wall organisation (2.73E-05/6.45E-04)

EXPA4

CIT.102.1.S1_S_AT

27

109

Stress

 

EXPA4

CIT.14005.1.S1_AT

11

18

  

RGP1

CIT.12232.1.S1_AT

65

75

  

EXPA4

CIT.14005.1.S1_S_AT

11

23

  

EXGT-A4

CIT.13455.1.S1_S_AT

100

ns

  

pectinase

CIT.35756.1.S1_AT

11/34

3/8

  

EXPA4

CIT.30858.1.S1_AT

10

15/191

 

DNA replication (1.83E-09/ NA)

DNA primase

CIT.15305.1.S1_AT

116

ns

  

ORC6

CIT.6968.1.S1_AT

133/139

ns/82

  

PRL

CIT.33111.1.S1_AT

87

ns

  

MCM

CIT.14761.1.S1_AT

78

ns/184

  

PRL

CIT.37935.1.S1_AT

140/163

ns/104

  

ATP binding

CIT.6836.1.S1_AT

66/136

131/94

  

UVI4

CIT.38230.1.S1_AT

118

43/173

  

MCM3

CIT.7153.1.S1_AT

47/130

ns/103

Fruit

Pigment accumulation (4.52E-04/ NA) phenylpropanoid metabolic process (2.17E-02/ NA)

ANL2

CIT.7832.1.S1_X_AT

62

ns

  

ANL2

CIT.14394.1.S1_S_AT

76

ns

  

GL2

CIT.28927.1.S1_AT

111

108

  

ATR2

CIT.10954.1.S1_S_AT

205

ns

  

FLS

CIT.871.1.S1_S_AT

39

250

  

TT6

CIT.2890.1.S1_S_AT

93

124

  

5MAT

CIT.14131.1.S1_AT

50

ns

  

oxidoreductase

CIT.5096.1.S1_AT

104

155

  

LDOX

Cit.5282.1.S1_at

137

ns

  

TT7

Cit.22444.1.S1_x_at

190

150

  1. P1 and P2 represent LOB1 probesets Cit.35190.1.S1_at and Cit.37210.1.S1_at respectively. HRR of corresponding co-expressed genes with LOB1 are shown in columns P1 and P2. For leaf and stress datasets, the HRR for each dataset are separated by a ‘/’. ns, not significant when P < 0.01.