Annotation of gene function in citrus using gene expression information and co-expression networks

BMC Plant Biology

Table 1 Summary of citrus co-expression network features in this study

Type	Dataset	No of nodes	No of edges	No of clusters	Parameter
Guide	Citrus	30217	2322886	30217	k = 100
	Csin	30217	2332083	30217	k = 100
	Fruit	30217	2309462	30217	k = 100
	Leaf	30217	2288176	30217	k = 100
	Stress	30217	2270004	30217	k = 100
Graph	Citrus	25943	139370	387	I = 1.2
	Csin	25117	140898	940	I = 1.3
	Fruit	24289	136421	657	I = 1.2
	Leaf	25747	143925	1416	I = 1.3
	Stress	25964	152214	1304	I = 1.3

k, top k HRR for a given gene-centric cluster; I, MCL inflation parameter. ‘Citrus’ represents all datasets (condition-independent) used in this study while ‘Csin’, ‘Fruit’, ‘Leaf’ and ‘Stress’ represent condition-dependent datasets of sweet orange–,fruit–, leaf– and stress– only conditions respectively.

ISSN: 1471-2229