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Table 2 The 16 BeMADS genes - similar to rice floral development-related MADS - were identified from B. edulis transcriptomes and B. oldhamii BAC library

From: BeMADS1 is a key to delivery MADSs into nucleus in reproductive tissues-De novo characterization of Bambusa edulis transcriptome and study of MADS genes in bamboo floral development

Gene

Illumina dataset

454 dataset

Hybrid dataset

Orthologous rice gene

Protein identity

BeMADS1

Unigene49607

isogroup06012, isogroup03511

Bamboo_rep_c34

OsMADS1

77.2% (244/257)

BeMADS2

-

isogroup00569

Bamboo_rep_c1172

OsMADS2

92.3% (209/209)

BeMADS3

Unigen16863

isogroup02737

Bamboo_c1430, Bamboo_c5032

OsMADS3

88.3% (236/287)

BeMADS4

Unigene31768

-

Bamboo_c4955

OsMADS4

83.3% (209/210)

BeMADS5 #

-

isogroup07515

Bamboo_c4877

OsMADS5

86.4% (228/225)

BeMADS6 #

Unigene274

isogroup00332

Bamboo_c2324

OsMADS6

89.7% (272/250)

BeMADS7 #

Unigene48557; Unigene26633

-

Bamboo_c7627

OsMADS7

83.5% (246/310)

BeMADS8

-

isogroup00335

Bamboo_rep_c1395

OsMADS8

88.8% (247/248)

BeMADS13 #

Unigene50193

-

-

OsMADS13

83.3% (249/270)

BeMADS14

-

isogroup03309

Bamboo_rep_c2518

OsMADS14

91.9% (244/253)

BeMADS15

-

isogroup00461

-

OsMADS15

86.2% (261/267)

BeMADS16

Unigene27646

isogroup00922

Bamboo_c5509

OsMADS16

90.4% (230/224)

BeMADS18 #

-

isogroup01124

-

OsMADS18

77.6% (255/249)

BeMADS21 #

Unigene39623

-

-

OsMADS21

78.7% (252/265)

BeMADS34 #

-

-

-

OsMADS34

81.1% (218/239)

BeMADS58

Unigene53551

isogroup02355

-

OsMADS58

85.2% (230/233)

  1. -: no homologous sequence was identified in this database.
  2. #: full length genes were identified by BAC sequences.