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Table 1 Sequence assembly results from three B. edulis transcriptome databases

From: BeMADS1 is a key to delivery MADSs into nucleus in reproductive tissues-De novo characterization of Bambusa edulis transcriptome and study of MADS genes in bamboo floral development

 

Platform

Unigene

Total length (nt)

Min length (bp)

Max length (bp)

Mean length (bp)

N50

GC percentage

N percentage

454

454

15,117

7,824,977

200

4,347

518

562a

46.84%

0.01%

Illumina

Illumina

54,830

19,681,401

200

4,666

359

361b

50.44%

0.23%

Hybrid

454+Illumina

8,241

5,517,588

200

4,666

670

730c

48.02%

0.13%

  1. a50% of the assembled bases were incorporated into contigs of 562 bp or longer.
  2. b50% of the assembled bases were incorporated into unigenes of 361 bp or longer.
  3. c50% of the assembled bases were incorporated into unigenes of 730 bp or longer.
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BMC Plant Biology

ISSN: 1471-2229

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