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Table 5 Up- and down-regulated transcripts in pollen of ragweed from 380ppm CO 2 (control) and 700ppm CO 2 concentrations filtered for the terms Ambrosia , ragweed, pollen, extensin, exine, intine, cell wall, coat, allergen and the Allfam database

From: Ragweed (Ambrosia artemisiifolia) pollen allergenicity: SuperSAGE transcriptomic analysis upon elevated CO2 and drought stress

Database-id Database Description Normalized tags per million p-value Fold change (log2)
380 ppm CO2 700 ppm CO2
296281905 Asteraceae A. trifida, putative clathrin assembly protein 1025.19 1139.63 5.92e-11 +0.15
296281822 Asteraceae A. trifida, putative signal peptidase 1.548 9.68 3.62e-10 +2.64
296281744 Asteraceae A. trifida, conserved hypothetical protein 1.77 9.97 6.62e-10 +2.49
296281890 Asteraceae A. trifida, conserved hypothetical protein 1463.71 1586.87 2.83e-09 +0.11
296281917 Asteraceae A. trifida, DNA-directed RNA polymerase family protein 0.89 7.01 1.97e-08 +2.99
TC43769 Asteraceae_TIGR A. artemisiifolia, profilin, pollen allergen Amb a 8.1 4.64 0.64 3.27e-08 −2.86
255779153 Asteraceae A. trifida, SF26 protein 796.31 879.06 7.45e-08 +0.14
296281873 Asteraceae A. trifida, putative mitochondrial ATP synthase 6 kDa subunit 9.29 20.23 1.94e-07 +1.12
255779194 Asteraceae A. trifida, putative cullin-1-protein 0.44 4.87 9.01e-07 +3.46
296281858 Asteraceae A. trifida, unnamed protein product 18.8 32.11 1.20e-06 +0.77
255777293 Asteraceae A. trifida, mitochondrial outer membrane membrane protein 3.76 10.43 5.873-06 +1.37
296281875 Asteraceae A. trifida, signal peptidase subunit family protein 0.05 2.9 1.40e-05 +5.87
296281777 Asetraceae A. trifida, calmodulin-like protein 8.85 17.1 2.93e-05 +0.95
255779292 Asteraceae A. trifida, 60S ribosomal protein L35a 1.33 0.05 3.33e-05 −4.73
255779177 Asteraceae A. trifida, putative CREG1 1.33 0.05 3.33e-05 −4.73
TC40290 Asteraceae_TIGR Pollen-specific protein SF21 (Helianthus annuus) 11.28 166.45 0 +3.88
TC52779 Asteraceae_TIGR Pollen coat protein (Brassica oleracea) 710.51 539.79 2.22e-39 −0.4
TC5878 Asteraceae_TIGR Pollen tube RhoGDI2 (Nicotiana tabacum) 0.05 9.97 6.50e-18 +7.64
261291923 Asteraceae Pistil-specific extensin-like protein (Carthamus tinctorius) 0.89 4.93 2.31e-05 +2.47
126480015 GDB Seed coat (Brassica napus) 0.22 1800.66 0 +12.99
33323054 GDB Acidic chitinase (Ficus awkeotsang) 0.05 58.65 0 +10.20
TC7736 Asteraceae_TIGR Carbonic anhydrase (Solanum lycopersicum) 0.05 9.39 6.67e-17 +7.55
FS486814 Asteraceae_TIGR 2-Cys peroxiredoxin-like protein (Arabidopsis thaliana) 0.66 114.17 0 +7.43
BU019358 Asteraceae_TIGR Thioredoxin (Medicago trunculata) 305.83 600.70 0 +0.97
AI100454 All_TIGR_Plant.fa Serine/threonine protein kinase (Brassica napus) 152.14 34.25 0 −2.15
195607463 GDB Aspartic proteinase nephentesin precursor (Zea mays) 24.33 3.01 2.99e-38 −3.01
GR085079 Asteraceae Lipid-transfer protein (Salvia miltiorrhiza) 0.05 17.21 1.28-23 +9.20
TC5118 Asteraceae_TIGR Pathogenesis-related protein 5–1 (Helianthus annus) 7.96 33.21 1.16e-24 +2.06
  1. Known Ambrosia artemisiifolia allergens are shown in bold.