Table 4 Up- and down-regulated transcripts in pollen of ragweed from 380ppm CO 2 (control) and 700ppm CO 2 concentrations filtered for the terms Ambrosia , ragweed, pollen, extensin, exine, intine, cell wall, coat, allergen and the Allfam database
Database-id | Database | Description | Normalized tags per million | p-value | Fold change (log2) | |
|---|---|---|---|---|---|---|
380 ppm CO2 | 700 ppm CO2 | |||||
296281908 | Asteraceae | A. trifida, putative ribosomal protein L34 | 685.524 | 0.05 | 0 | −13.74 |
255779233 | Asteraceae | A. trifida, ß-glucosidase | 196.37 | 0.05 | 0 | −11.94 |
296281756 | Asteraceae | A. trifida, putative ribokinase | 71.21 | 0.17 | 0 | −8.68 |
255779271 | Asteraceae | A. trifida, conserved hypothetical protein | 410.97 | 115.33 | 0 | −1.83 |
255779264 | Asteraceae | A. trifida, hypothetical protein | 433.43 | 249.61 | 0 | −0.8 |
255779319 | Asteraceae | A. trifida, abscisic acid-responsive HVA22 family | 22129.3 | 13586.99 | 0 | −0.7 |
296281926 | Asteraceae | A. trifida, putative pollen-specific protein | 8282.9 | 5596.37 | 0 | −0.57 |
302127809 | GDB | A. artemisiifolia, pectate lyase, pollen allergen Amb a 1.1 | 615.2 | 1102.65 | 0 | +0.84 |
166442 | GDB | A. artemisiifolia, pectate lyase, pollen allergen Amb a 1.3 | 113.89 | 233.1 | 0 | +1.03 |
62249490 | GDB | A. artemisiifolia, calcium binding, pollen allergen Amb a 10 | 82.71 | 218.2 | 0 | +1.40 |
TC52169 | Asteraceae_TIGR | A. artemisiifolia, calcium binding, pollen allergen Amb a 9.1 | 25.43 | 136.31 | 0 | +2.42 |
255779240 | Asteraceae | A. trifida, lipid transfer protein | 0.05 | 29.38 | 0 | +9.20 |
296281913 | Asteraceae | A. trifida, putative 60S ribosomal protein L36 | 0.22 | 137.41 | 0 | +9.28 |
296281836 | Asteraceae | A. trifida, putative o-linked n-acetylglucosamine transferase | 1.77 | 25.44 | 9.34e-34 | +3.85 |
302127811 | GDB | A. artemisiifolia, pectate lyase, pollen allergen Amb a 1.2 | 30.08 | 71.62 | 6.40e-27 | +1.25 |
437311 | GDB | A. artemisiifolia, cystatin proteinase inhibitor | 1459.28 | 1258.73 | 2.95e-25 | −0.21 |
255779252 | Asteraceae | A. trifida, 60S ribosomal protein L38 | 1.77 | 17.16 | 1.24e-20 | +3.28 |
296281775 | Asteraceae | A. trifida, putative golgin-84-like protein | 44.45 | 19.82 | 3.03e-18 | −1.66 |
34851181 | GDB | A. artemisiifolia, profilin-like protein (D03) | 40.25 | 74.76 | 4.07e-17 | +0.89 |
255779129 | Asteraceae | A. trifida, 60S ribosomal protein | 1.99 | 13.56 | 2.14e-14 | +2.77 |
190607080 | GDB | A. trifida, putative galactan: galactan galactosyltransferase | 303.84 | 378.62 | 3.49e-14 | +0.32 |
166438 | GDB | A. artemisiifolia, pectate lyase, Amb a 1.2 precursor protein | 372.17 | 451.88 | 1.85e-13 | +0.28 |
296281810 | Asteraceae | A. trifida, putative ribosomal protein L5 | 2.65 | 13.91 | 7.56e-13 | +2.39 |
255779131 | Asteraceae | A. trifida, amino acid transporter | 409.32 | 337.7 | 1.27e-12 | −0.28 |
296282845 | Asteraceae | A. trifida, putative stellacyanin | 25.87 | 49.49 | 1.30e-12 | +0.94 |
296281843 | Asteracea | A. trifida, unnamed protein product | 0.89 | 9.22 | 7.99e-12 | +3.38 |
190607111 | Asteraceae | A. trifida, gibberellin-regulated protein | 24.99 | 10.78 | 1.28E-11 | −1.22 |