Skip to main content

Table 4 Up- and down-regulated transcripts in pollen of ragweed from 380ppm CO 2 (control) and 700ppm CO 2 concentrations filtered for the terms Ambrosia , ragweed, pollen, extensin, exine, intine, cell wall, coat, allergen and the Allfam database

From: Ragweed (Ambrosia artemisiifolia) pollen allergenicity: SuperSAGE transcriptomic analysis upon elevated CO2 and drought stress

Database-id Database Description Normalized tags per million p-value Fold change (log2)
380 ppm CO2 700 ppm CO2
296281908 Asteraceae A. trifida, putative ribosomal protein L34 685.524 0.05 0 −13.74
255779233 Asteraceae A. trifida, ß-glucosidase 196.37 0.05 0 −11.94
296281756 Asteraceae A. trifida, putative ribokinase 71.21 0.17 0 −8.68
255779271 Asteraceae A. trifida, conserved hypothetical protein 410.97 115.33 0 −1.83
255779264 Asteraceae A. trifida, hypothetical protein 433.43 249.61 0 −0.8
255779319 Asteraceae A. trifida, abscisic acid-responsive HVA22 family 22129.3 13586.99 0 −0.7
296281926 Asteraceae A. trifida, putative pollen-specific protein 8282.9 5596.37 0 −0.57
302127809 GDB A. artemisiifolia, pectate lyase, pollen allergen Amb a 1.1 615.2 1102.65 0 +0.84
166442 GDB A. artemisiifolia, pectate lyase, pollen allergen Amb a 1.3 113.89 233.1 0 +1.03
62249490 GDB A. artemisiifolia, calcium binding, pollen allergen Amb a 10 82.71 218.2 0 +1.40
TC52169 Asteraceae_TIGR A. artemisiifolia, calcium binding, pollen allergen Amb a 9.1 25.43 136.31 0 +2.42
255779240 Asteraceae A. trifida, lipid transfer protein 0.05 29.38 0 +9.20
296281913 Asteraceae A. trifida, putative 60S ribosomal protein L36 0.22 137.41 0 +9.28
296281836 Asteraceae A. trifida, putative o-linked n-acetylglucosamine transferase 1.77 25.44 9.34e-34 +3.85
302127811 GDB A. artemisiifolia, pectate lyase, pollen allergen Amb a 1.2 30.08 71.62 6.40e-27 +1.25
437311 GDB A. artemisiifolia, cystatin proteinase inhibitor 1459.28 1258.73 2.95e-25 −0.21
255779252 Asteraceae A. trifida, 60S ribosomal protein L38 1.77 17.16 1.24e-20 +3.28
296281775 Asteraceae A. trifida, putative golgin-84-like protein 44.45 19.82 3.03e-18 −1.66
34851181 GDB A. artemisiifolia, profilin-like protein (D03) 40.25 74.76 4.07e-17 +0.89
255779129 Asteraceae A. trifida, 60S ribosomal protein 1.99 13.56 2.14e-14 +2.77
190607080 GDB A. trifida, putative galactan: galactan galactosyltransferase 303.84 378.62 3.49e-14 +0.32
166438 GDB A. artemisiifolia, pectate lyase, Amb a 1.2 precursor protein 372.17 451.88 1.85e-13 +0.28
296281810 Asteraceae A. trifida, putative ribosomal protein L5 2.65 13.91 7.56e-13 +2.39
255779131 Asteraceae A. trifida, amino acid transporter 409.32 337.7 1.27e-12 −0.28
296282845 Asteraceae A. trifida, putative stellacyanin 25.87 49.49 1.30e-12 +0.94
296281843 Asteracea A. trifida, unnamed protein product 0.89 9.22 7.99e-12 +3.38
190607111 Asteraceae A. trifida, gibberellin-regulated protein 24.99 10.78 1.28E-11 −1.22
  1. Plants were grown in the greenhouse under control (380 ppm CO2) and 700 ppm CO2 concentrations. Using the STDGE-tool kit from GenXPro data were filtered for the terms Ambrosia, ragweed, pollen, extensin, exine, intine, cell wall, coat, allergen and the Allfam database. Known allergenic proteins in Ambrosia are shown in bold.