Figure 5

Gene structures of CsCCD7 and CsCCD8 and the phylogenetic relationship with CsCCD7 and CsCCD8 homologues from other plant species. (A) The postulated intron/exon structure for CsCCD7 and positions of the introns in orthologues of CsCCD7 is shown in the left side of the figure. In the right side a representative phylogenetic tree of CCD7 proteins from different plant species is shown. (B) The postulated intron/exon structure for CsCCD8 and positions of the introns in orthologues of CsCCD8 is shown at the left side. In the right side a representative phylogenetic tree of CCD8 proteins from different plant species is shown. Exons and introns are shown as boxes and lines, respectively. The present trees were obtained after alignment of full-length CCDs sequences using ClustalW and clustering with the neighbour-joining method. Accession numbers are as follow: SlCCD7 (ACY39882.1), PhCCD7 (ACY01408.1), AcCCD7 (ADP37985.1), ZmCCD7 (NP_001183928.1), RcCCD7 (XP_002511629.1), VvCCD7 (XP_002274198.1), AaCCD7 (ADB64459.1), PsCCD7 (ABD67496.2), GmCCD7 (ADK26570.1), AtCCD7 (NP_182026.4), CcsCCD7 (ADM18968.1), SmCCD7 (XP_002984696.1), OsCCD7 (EAY95081.1), LjCCD7 (ADM88552.1), MtCCD7 (XP_003622555.1), BdCCD7 (XP_003581501.1), PpCCD7 (ADK36680.1), PtCCD8a (XP002309543), PtCCD8b (XP002324797), AcCCD8 (GU206812.1), AtCCD8 (AT4G32810), BdCCD8 (LOC100831734), MtCCD8 (Medtr3 g127920), OsCCD8 (Os01 g0746400), Dad1 (AY743219), RMS1 (AY557342), SbCCD8 (Sb03 g034400), ZmCCD8 (GRMZM2G446858), RcCCD8, SlCCD8 (NP_001266276.1), StCCD8 (XP_006359761.1), CitCCD8a (KD079823), CitCCD8b (XP_006476130, CaCCD8b (XP_004501157), PpCCD8 (ADK36681.1), SmCCD8 (XP_002972693.1), GmCCD8b (XP_003522713), Gm CCD8a (XP_003522713.2). Branch support is under 5000 Bootstrap replicas.