TY - JOUR AU - Yang, W. C. AU - Ye, D. AU - Xu, J. AU - Sundaresan, V. PY - 1999 DA - 1999// TI - The SPOROCYTELESS gene of Arabidopsis is required for initiation of sporogenesis and encodes a novel nuclear protein JO - Genes Dev VL - 13 UR - https://doi.org/10.1101/gad.13.16.2108 DO - 10.1101/gad.13.16.2108 ID - Yang1999 ER - TY - JOUR AU - Wilson, Z. A. AU - Yang, C. PY - 2004 DA - 2004// TI - Plant gametogenesis: conservation and contrasts in development JO - Reproduction VL - 128 UR - https://doi.org/10.1530/rep.1.00306 DO - 10.1530/rep.1.00306 ID - Wilson2004 ER - TY - JOUR AU - Brukhin, V. AU - Curtis, M. D. AU - Grossniklaus, U. PY - 2005 DA - 2005// TI - The angiosperm female gametophyte: No longer the forgotten generation JO - Curr Sci VL - 89 ID - Brukhin2005 ER - TY - JOUR AU - Okano, Y. AU - Aonoa, N. AU - Hiwatashia, Y. AU - Murata, T. AU - Nishiyama, T. AU - Ishikawa, T. AU - Kuboc, M. AU - Hasebe, M. PY - 2009 DA - 2009// TI - A polycomb repressive complex 2 gene regulates apogamy and gives evolutionary insights into early land plant evolution JO - Proc Natl Acad Sci USA VL - 106 UR - https://doi.org/10.1073/pnas.0906997106 DO - 10.1073/pnas.0906997106 ID - Okano2009 ER - TY - JOUR AU - Mosquna, A. AU - Katz, A. AU - Decker, E. L. AU - Rensing, S. A. AU - Reski, R. AU - Ohad, N. PY - 2009 DA - 2009// TI - Regulation of stem cell maintenance by the Polycomb protein FIE has been conserved during land plant evolution JO - Development VL - 136 UR - https://doi.org/10.1242/dev.035048 DO - 10.1242/dev.035048 ID - Mosquna2009 ER - TY - JOUR AU - Johri, M. M. AU - Desai, S. PY - 1973 DA - 1973// TI - Auxin regulation of caulonema formation in moss protonema JO - Nat New Biol VL - 245 UR - https://doi.org/10.1038/newbio245223a0 DO - 10.1038/newbio245223a0 ID - Johri1973 ER - TY - JOUR AU - Fujita, T. AU - Sakaguchi, H. AU - Hiwatashi, Y. AU - Wagstaff, S. J. I. AU - Ito, M. AU - Deguchi, H. AU - Sato, T. AU - Hasebe, M. PY - 2008 DA - 2008// TI - Convergent evolution of shoots in land plants: lack of auxin polar transport in moss shoots JO - Evol Dev VL - 10 UR - https://doi.org/10.1111/j.1525-142X.2008.00225.x DO - 10.1111/j.1525-142X.2008.00225.x ID - Fujita2008 ER - TY - JOUR AU - Landberg, K. AU - Pederson, E. R. A. AU - Viaene, T. AU - Bozorg, B. AU - Friml, J. AU - Jonsson, H. AU - Thelander, M. AU - Sundberg, E. PY - 2013 DA - 2013// TI - The moss Physcomitrella patens reproductive organ development is highly organized, affected by the two SHI/STY genes and by the level of active auxin in the SHI/STY expression domain JO - Plant Physiol VL - 162 UR - https://doi.org/10.1104/pp.113.214023 DO - 10.1104/pp.113.214023 ID - Landberg2013 ER - TY - JOUR AU - Sakakibara, K. AU - Ando, S. AU - Yip, H. K. AU - Tamanada, Y. AU - Hiwatashi, Y. AU - Murata, T. AU - Deguchi, H. AU - Hasebe, M. AU - Bowman, J. L. PY - 2013 DA - 2013// TI - KNOX2 genes regulate the haploid-to-diploid morphological transition in land plants JO - Science VL - 339 UR - https://doi.org/10.1126/science.1230082 DO - 10.1126/science.1230082 ID - Sakakibara2013 ER - TY - JOUR AU - He-Nygren, X. AU - Juslen, A. AU - Ahonen, I. AU - Glenny, D. AU - Piippo, S. PY - 2006 DA - 2006// TI - Illuminating the evolutionary history of liverworts (Marchantiophyta) - towards a natural classification JO - Cladistics VL - 22 UR - https://doi.org/10.1111/j.1096-0031.2006.00089.x DO - 10.1111/j.1096-0031.2006.00089.x ID - He-Nygren2006 ER - TY - CHAP AU - Newton, M. E. ED - Dyer, A. F. ED - Duckett, J. G. PY - 1984 DA - 1984// TI - The Cytogentetics of Bryophytes BT - The Experimental Biology in Bryophytes PB - Academic Press CY - London ID - Newton1984 ER - TY - JOUR AU - Bischler, H. PY - 1986 DA - 1986// TI - Marchantia polymorpha L.S. LAT. karyotype analysis JO - J Hattori Bot Lab VL - 604 ID - Bischler1986 ER - TY - JOUR AU - Nakayama, S. AU - Fujishita, M. AU - Sone, T. AU - Ohyama, K. PY - 2001 DA - 2001// TI - Additional locus of rDNA sequence specific to the X chromosome of the liverwort, Marchantia polymorpha JO - Chromosome Res VL - 9 UR - https://doi.org/10.1023/A:1011676328165 DO - 10.1023/A:1011676328165 ID - Nakayama2001 ER - TY - STD TI - Scientific Exchange for Marchantia polymorpha. [http://synbio.org.uk/marchantia/www-marchantia-org/why-marchantia.html] UR - http://synbio.org.uk/marchantia/www-marchantia-org/why-marchantia.html ID - ref14 ER - TY - JOUR PY - 1964 DA - 1964// TI - Physiology of sexual reproduction in bryophytes JO - Bryologist VL - 67 UR - https://doi.org/10.1639/0007-2745(1964)67[431:POTROB]2.0.CO;2 DO - 10.1639/0007-2745(1964)67[431:POTROB]2.0.CO;2 ID - ref15 ER - TY - JOUR AU - Nagai, J. AU - Yamato, K. T. AU - Sakaida, M. AU - Yoda, H. AU - Fukuzawa, H. AU - Ohyama, K. PY - 1999 DA - 1999// TI - Expressed sequence tags from immature female sexual organ of a liverwort, Marchantia polymorpha JO - DNA Res VL - 6 UR - https://doi.org/10.1093/dnares/6.1.1 DO - 10.1093/dnares/6.1.1 ID - Nagai1999 ER - TY - JOUR AU - Nishiyama, R. AU - Yamato, K. T. AU - Miura, K. AU - Sakaida, M. AU - Okada, S. AU - Kono, K. AU - Takahama, M. AU - Sone, T. AU - Takenaka, M. AU - Fukuzawa, H. AU - Ohyama, K. PY - 2000 DA - 2000// TI - Comparison of expressed sequence tags from male and female sexual organs of Marchantia polymorpha JO - DNA Res VL - 7 UR - https://doi.org/10.1093/dnares/7.3.165 DO - 10.1093/dnares/7.3.165 ID - Nishiyama2000 ER - TY - JOUR AU - Sharma, N. AU - Jung, C. -. H. AU - Bhalla, P. L. AU - Singh, M. B. PY - 2014 DA - 2014// TI - RNA sequencing analysis of the gametophyte transcriptome from the liverwort. Marchantia polymorpha JO - PLoS One VL - 9 UR - https://doi.org/10.1371/journal.pone.0097497 DO - 10.1371/journal.pone.0097497 ID - Sharma2014 ER - TY - JOUR AU - Sharma, N. AU - Bhalla, P. L. AU - Singh, M. B. PY - 2013 DA - 2013// TI - Transcriptome-wide profiling and expression analysis of transcription factor families in a liverwort. Marchantia polymorpha JO - BMC Genomics VL - 14 UR - https://doi.org/10.1186/1471-2164-14-915 DO - 10.1186/1471-2164-14-915 ID - Sharma2013 ER - TY - STD TI - DOE Joint Genome Institute. [http://jgi.doe.gov/why-sequence-a-liverwort/] UR - http://jgi.doe.gov/why-sequence-a-liverwort/ ID - ref20 ER - TY - CHAP AU - Bell, P. R. AU - Hemsley, A. R. PY - 2000 DA - 2000// TI - The Subkingdom Embryophyta: Division Bryophyta (Mosses and Liverworts) BT - Green Plants: Their Origin and Diversity PB - Cambrige University Press CY - Cambrige UR - https://doi.org/10.1017/CBO9780511807831.007 DO - 10.1017/CBO9780511807831.007 ID - Bell2000 ER - TY - CHAP AU - Crandall-Stotler, B. AU - Stotler, R. ED - Shaw, A. J. ED - Goffinet, B. PY - 2000 DA - 2000// TI - Morphology and Classification of the Marchantiophyta BT - Bryophyte Biology PB - Cambridge University Press CY - Cambridge UR - https://doi.org/10.1017/CBO9781139171304.003 DO - 10.1017/CBO9781139171304.003 ID - Crandall-Stotler2000 ER - TY - BOOK AU - Schuster, R. M. PY - 1992 DA - 1992// TI - The Hepaticae and Anthocerotae of North America. Vol V PB - Field Museum of Natural History CY - Chicago ID - Schuster1992 ER - TY - BOOK AU - Paton, J. A. PY - 1999 DA - 1999// TI - The Liverwort Flora of the British Isles PB - Harley Books CY - Colchester ID - Paton1999 ER - TY - JOUR AU - Sierocka, I. AU - Rojek, A. AU - Bielewicz, D. AU - Karlowski, W. AU - Jarmolowski, A. AU - Szweykowska-Kulinska, Z. PY - 2011 DA - 2011// TI - Novel genes specifically expressed during the development of the male thalli and antheridia in the dioecious liverwort Pellia endiviifolia JO - Gene VL - 485 UR - https://doi.org/10.1016/j.gene.2011.06.012 DO - 10.1016/j.gene.2011.06.012 ID - Sierocka2011 ER - TY - CHAP AU - Rojek, A. AU - Pasternak, I. AU - Szweykowska-Kulinska, Z. ED - Mohamed, H. ED - Baki, B. B. ED - Nasrulhaq-Boyce, A. ED - Lee, P. K. Y. PY - 2008 DA - 2008// TI - Differentially Expressed Genes in Male and Female Gametophytes of the Liverwort Pellia Endiviifolia Subspecies B (Pelliaceae) BT - Bryology in the New Millenium, Proceedings of the World Bryology Conference 2007Kuala Lumpur Malaysia PB - University of Malaya CY - Kuala Lumpur ID - Rojek2008 ER - TY - JOUR AU - Blast Altschul, S. F. AU - Gish, W. AU - Miller, W. AU - Myers, E. W. AU - Lipman, D. J. PY - 1990 DA - 1990// TI - Basic local alignment search tool JO - J Mol Biol VL - 215 UR - https://doi.org/10.1016/S0022-2836(05)80360-2 DO - 10.1016/S0022-2836(05)80360-2 ID - Blast Altschul1990 ER - TY - JOUR AU - Larkin, M. A. AU - Blackshields, G. AU - Brown, N. P. AU - Chenna, R. AU - McGettigan, P. A. AU - McWilliam, H. AU - Valentin, F. AU - Wallace, I. M. AU - Wilm, A. AU - Lopez, R. AU - Thompson, J. D. AU - Gibson, T. J. AU - Higgins, D. G. PY - 2007 DA - 2007// TI - ClustalW and ClustalX version 2 JO - Bioinformatics VL - 23 UR - https://doi.org/10.1093/bioinformatics/btm404 DO - 10.1093/bioinformatics/btm404 ID - Larkin2007 ER - TY - STD TI - ExPASy bioinformatics resource portal, BoxShade server. http://embnet.vital-it.ch/software/BOX_form.html, UR - http://embnet.vital-it.ch/software/BOX_form.html ID - ref29 ER - TY - STD TI - ExPASy bioinformatics resource portal, MyHits database, motif scan tool. http://myhits.isb-sib.ch/cgi-bin/motif_scan, UR - http://myhits.isb-sib.ch/cgi-bin/motif_scan ID - ref30 ER - TY - JOUR AU - Zdobnov, E. M. AU - Apweiler, R. PY - 2001 DA - 2001// TI - InterProScan - an integration platform for the signature-recognition methods in InterPro JO - Bioinformatics VL - 17 UR - https://doi.org/10.1093/bioinformatics/17.9.847 DO - 10.1093/bioinformatics/17.9.847 ID - Zdobnov2001 ER - TY - JOUR AU - Letunic, I. AU - Doerks, T. AU - Bork, P. PY - 2012 DA - 2012// TI - SMART 7: recent updates to the protein domain annotation resource JO - Nucleic Acids Res VL - 40 UR - https://doi.org/10.1093/nar/gkr931 DO - 10.1093/nar/gkr931 ID - Letunic2012 ER - TY - JOUR AU - Briesemeister, S. AU - Rahnenführer, J. AU - Kohlbacher, O. PY - 2010 DA - 2010// TI - YLoc - an interpretable web server for predicting subcellular localization JO - Nucleic Acids Res VL - 38 UR - https://doi.org/10.1093/nar/gkq477 DO - 10.1093/nar/gkq477 ID - Briesemeister2010 ER - TY - STD TI - PlantLoc: plant proteins subcellular localization prediction server. http://cal.tongji.edu.cn/PlantLoc, UR - http://cal.tongji.edu.cn/PlantLoc ID - ref34 ER - TY - STD TI - ExPASy bioinformatics resource portal, ProtParam tool. http://expasy.org/tools/protparam.html, UR - http://expasy.org/tools/protparam.html ID - ref35 ER - TY - STD TI - FGENESH program. http://linux1.softberry.com/berry.phtml?topic=fgenesh&group=programs&subgroup=gfind, UR - http://linux1.softberry.com/berry.phtml?topic=fgenesh&group=programs&subgroup=gfind ID - ref36 ER - TY - JOUR AU - Kurowski, M. A. AU - Bujnicki, J. M. PY - 2003 DA - 2003// TI - GeneSilico protein structure prediction meta-server JO - Nucleic Acids Res VL - 31 UR - https://doi.org/10.1093/nar/gkg557 DO - 10.1093/nar/gkg557 ID - Kurowski2003 ER - TY - JOUR AU - Zhang, Y. PY - 2008 DA - 2008// TI - I-TASSER server for protein 3D structure prediction JO - BMC Bioinformatics VL - 23 UR - https://doi.org/10.1186/1471-2105-9-40 DO - 10.1186/1471-2105-9-40 ID - Zhang2008 ER - TY - JOUR AU - Kozlowski, L. P. AU - Bujnicki, J. M. PY - 2012 DA - 2012// TI - MetaDisorder: a meta-server for the prediction of intrinsic disorder in proteins JO - BMC Bioinformatics VL - 13 UR - https://doi.org/10.1186/1471-2105-13-111 DO - 10.1186/1471-2105-13-111 ID - Kozlowski2012 ER - TY - JOUR AU - Wiederanders, B. PY - 2003 DA - 2003// TI - Structure-function relationships in class CA1 cysteine peptidase propeptides JO - Acta Biochim Pol VL - 50 ID - Wiederanders2003 ER - TY - JOUR AU - Olonen, A. AU - Kalkkinen, N. AU - Paulin, L. PY - 2003 DA - 2003// TI - A new type of cysteine proteinase inhibitor-the salarin gene from Atlantic salmon (Salmo salar L.) and Arctic charr (Salvelinus alpinus) JO - Biochimie VL - 85 UR - https://doi.org/10.1016/S0300-9084(03)00128-7 DO - 10.1016/S0300-9084(03)00128-7 ID - Olonen2003 ER - TY - JOUR AU - Wellmer, F. AU - Riechmann, J. L. PY - 2010 DA - 2010// TI - Gene networks controlling the initiation of flower development JO - Trends Genet VL - 26 UR - https://doi.org/10.1016/j.tig.2010.09.001 DO - 10.1016/j.tig.2010.09.001 ID - Wellmer2010 ER - TY - JOUR AU - Huijser, P. AU - Schmid, M. PY - 2011 DA - 2011// TI - The control of developmental phase transitions in plants JO - Development VL - 138 UR - https://doi.org/10.1242/dev.063511 DO - 10.1242/dev.063511 ID - Huijser2011 ER - TY - JOUR AU - Mouradov, A. AU - Cremer, F. AU - Coupland, G. PY - 2002 DA - 2002// TI - Control of flowering time: interacting pathways as a basis for diversity JO - Plant Cell VL - 14 ID - Mouradov2002 ER - TY - JOUR AU - Amasino, R. PY - 2010 DA - 2010// TI - Seasonal and developmental timing of flowering JO - Plant J VL - 61 UR - https://doi.org/10.1111/j.1365-313X.2010.04148.x DO - 10.1111/j.1365-313X.2010.04148.x ID - Amasino2010 ER - TY - JOUR AU - Chopra, R. N. AU - Bathla, S. C. PY - 1981 DA - 1981// TI - Effect of physical factors on gametangial induction and sporophyte development in the moss Bryum argenteum grown in vitro JO - New Phytol VL - 89 UR - https://doi.org/10.1111/j.1469-8137.1981.tb02325.x DO - 10.1111/j.1469-8137.1981.tb02325.x ID - Chopra1981 ER - TY - JOUR AU - Renzaglia, K. S. AU - Duff, R. J. AU - Nickrent, D. L. AU - Garbary, D. J. PY - 2000 DA - 2000// TI - Vegetative and reproductive innovations of early land plants: implications for a unified phylogeny JO - Philos T Roy Soc B VL - 355 UR - https://doi.org/10.1098/rstb.2000.0615 DO - 10.1098/rstb.2000.0615 ID - Renzaglia2000 ER - TY - JOUR AU - Zinsmeister, D. D. AU - Carothers, Z. B. PY - 1974 DA - 1974// TI - The fine structure of oogenesis in Marchantia polymorpha JO - Am J Bot VL - 61 UR - https://doi.org/10.2307/2442021 DO - 10.2307/2442021 ID - Zinsmeister1974 ER - TY - JOUR AU - Funk, V. AU - Kositsup, B. AU - Zhao, C. AU - Beers, E. P. PY - 2002 DA - 2002// TI - The Arabidopsis xylem peptidase XCP1 is a tracheary element vacuolar protein that may be a papain ortholog JO - Plant Physiol VL - 128 UR - https://doi.org/10.1104/pp.010514 DO - 10.1104/pp.010514 ID - Funk2002 ER - TY - JOUR AU - Cercos, M. AU - Harris, N. AU - Carbonell, J. PY - 1993 DA - 1993// TI - Immunolocalization of a thiol-protease induced during the senescence of unpollinated pea ovaries JO - Physiol Plantarum VL - 88 UR - https://doi.org/10.1111/j.1399-3054.1993.tb05499.x DO - 10.1111/j.1399-3054.1993.tb05499.x ID - Cercos1993 ER - TY - JOUR AU - Li, N. AU - Zhang, D. S. AU - Liu, H. S. AU - Yin, C. S. AU - Li, X. X. AU - Liang, W. Q. AU - Yuan, Z. AU - Xu, B. AU - Chu, H. W. AU - Wang, J. AU - Wen, T. Q. AU - Huang, H. AU - Luo, D. AU - Ma, H. AU - Zhang, D. B. PY - 2006 DA - 2006// TI - The rice tapetum degeneration retardation gene is required for tapetum degradation and anther development JO - Plant Cell VL - 18 UR - https://doi.org/10.1105/tpc.106.044107 DO - 10.1105/tpc.106.044107 ID - Li2006 ER - TY - JOUR AU - Grudkowska, M. AU - Zagdanska, B. PY - 2004 DA - 2004// TI - Multifunctional role of plant cysteine proteinases JO - Acta Biochim Pol VL - 51 ID - Grudkowska2004 ER - TY - JOUR AU - Gollery, M. AU - Harper, J. AU - Cushman, J. AU - Mittler, T. AU - Girke, T. AU - Zhu, J. K. AU - Bailey-Serres, J. AU - Mittler, R. PY - 2006 DA - 2006// TI - What makes species unique? The contribution of proteins with obscure features JO - Genome Biol VL - 7 UR - https://doi.org/10.1186/gb-2006-7-7-r57 DO - 10.1186/gb-2006-7-7-r57 ID - Gollery2006 ER - TY - JOUR AU - Gollery, M. AU - Harper, J. AU - Cushman, J. AU - Mittler, T. AU - Mittler, R. PY - 2007 DA - 2007// TI - POFs: what we don’t know can hurt us JO - Trends Plant Sci VL - 12 UR - https://doi.org/10.1016/j.tplants.2007.08.018 DO - 10.1016/j.tplants.2007.08.018 ID - Gollery2007 ER - TY - JOUR AU - Paterson, A. H. AU - Bowers, J. E. AU - Bruggmann, R. AU - Dubchak, I. AU - Grimwood, J. AU - Gundlach, H. AU - Haberer, G. AU - Hellsten, U. AU - Mitros, T. AU - Poliakov, A. AU - Schmutz, J. AU - Spannagl, M. AU - Tang, H. AU - Wang, X. AU - Wicker, T. AU - Bharti, A. K. AU - Chapman, J. AU - Feltus, F. A. AU - Gowik, U. AU - Grigoriev, I. V. AU - Lyons, E. AU - Maher, C. A. AU - Martis, M. AU - Narechania, A. AU - Otillar, R. P. AU - Penning, B. W. AU - Salamov, A. A. AU - Wang, Y. AU - Zhang, L. AU - Carpita, N. C. PY - 2008 DA - 2008// TI - The Sorghum bicolor genome and the diversification of grasses JO - Nature VL - 457 UR - https://doi.org/10.1038/nature07723 DO - 10.1038/nature07723 ID - Paterson2008 ER - TY - JOUR PY - 2011 DA - 2011// TI - Genome sequence and analysis of the tuber crop potato JO - Nature VL - 475 UR - https://doi.org/10.1038/nature10158 DO - 10.1038/nature10158 ID - ref56 ER - TY - JOUR AU - Zimmer, A. D. AU - Lang, D. AU - Buchta, K. AU - Rombauts, S. AU - Nishiyama, T. AU - Hasebe, M. AU - Van de Peer, Y. AU - Rensing, S. A. AU - Reski, R. PY - 2013 DA - 2013// TI - Reannotation and extended community resources for the genome of the non-seed plant Physcomitrella patens provide insights into the evolution of plant gene structures and functions JO - BMC Genomics VL - 14 UR - https://doi.org/10.1186/1471-2164-14-498 DO - 10.1186/1471-2164-14-498 ID - Zimmer2013 ER - TY - JOUR AU - Kersting, A. R. AU - Bornberg-Bauer, E. AU - Moore, A. D. AU - Grath, S. PY - 2012 DA - 2012// TI - Dynamics and adaptive benefits of protein domain emergence and arrangements during plant genome evolution JO - Genome Biol Evol VL - 4 UR - https://doi.org/10.1093/gbe/evs004 DO - 10.1093/gbe/evs004 ID - Kersting2012 ER -