Table 1 Transposable elements in the cranberry genome
From: The American cranberry: first insights into the whole genome of a species adapted to bog habitat
| Â | Cranberry | Cucumber | Apple | Grape | Arabidopsis | Rice | Melon | Maize |
|---|---|---|---|---|---|---|---|---|
| Â | % of genome | % of genome | % of genome | % of genome | % of genome | % of genome | % of genome | % of genome |
Transposable Elements | 39.53 | 14.80 | 42.40 | 21.50 | 18.50 | 39.60 | 24.10 | 84.20 |
Class I: retrotransposons | 10.14 | 6.9 | 37.6 | 19.4 | 7.5 | 25.9 | 12.16 | 75.60 |
LTR/Copia | 3.50 | - | 5.5 | 4.8 | 1.4 | 2.5 | 10.43 | 23.70 |
LTR/Gypsy | 3.72 | - | 25.2 | 14.0 | 5.2 | 12.0 | 46.40 | |
SINE | 0.45 | - | - | - | - | 0.5 | 0.01 | - |
LINE | 2.20 | - | 6.5 | 0.6 | 0.9 | 0.8 | 1.74 | 1.00 |
Others | 0.27 | - | 0.4 | - | - | - | - | - |
Unclassified | - | - | - | - | - | 10.1 | 11.64 | 4.50 |
Class II: DNA transposons | 5.34 | 0.8 | 0.9 | 1.4 | 11.0 | 13.7 | 1.24 | 8.60 |
Hobo-Activator | 2.51 | - | 0.3 | 0.8 | 0.3 | 0.5 | - | 1.1 |
Tc1-IS630-Pogo | 0.10 | - | - | - | 0.1 | - | - | - |
Tourist/Harbinger | 0.25 | - | - | - | 0.2 | 1.5 | - | 1.0 |
Others | 2.48 | - | 0.6 | 0.6 | 9.9 | 7.4 | - | 6.5 |
Unclassified | Â | - | - | - | 0.5 | 4.3 | - | - |
Unknown | 24.04 | 7.1 | 3.9 | 0.7 | - | - | - | - |