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Table 2 Interesting EDGs, gene families or pathways

From: A genomic perspective on the important genetic mechanisms of upland adaptation of rice

    Pvalue for enrichment test or gene annotation Potentially impacted phenotypes
EDGs for the whole population Enriched gene families or categories Lipase containing GDSL domain 7.49e-05 Response to drought stress
Peroxidase 1.80e-03 Response to oxidative stress, drought tolerance
Glutathione-related genes 5.44e-08 Response to oxidative stress, drought tolerance
Auxin related genes 3.80e-06 Plant height and roots
Interesting genes Os12g0597000 SOS3-like calcium binding protein Response to water deprivation, drought tolerance
Os12g0597700 WRKY DNA binding protein Drought tolerance
Os11g0474600 terpenoid synthase Tillering ability
Os04g0616400, Os04g0616600 Serine/threonine protein kinase Drought tolerance
Os01g0646000, Os06g0184866, Os06g0185800 Pentatricopeptide repeat domain containing protein Response to oxidative stress, drought tolerance
Os07g0449700 type A response regulator Plant height and roots
Japonica specific EDGs Enriched gene families or categories Mitogen-activated protein kinase 1.37e-14 Response to biotic stress, like blast, and promoting root development
WRKY genes 0.03 Drought tolerance
Thioredoxin 0.04 Response to oxidative stress, drought tolerance
Interesting genes Os09g0410500 homolog to teosinte-branched 1(tb1) Tillering ability
  1. For the EDGs of the whole population and japonica specific EDGs, the enriched gene families and interesting genes in them are shown. And their potentially functional effects are indicated.
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