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Table 2 Interesting EDGs, gene families or pathways

From: A genomic perspective on the important genetic mechanisms of upland adaptation of rice

   

Pvalue for enrichment test or gene annotation

Potentially impacted phenotypes

EDGs for the whole population

Enriched gene families or categories

Lipase containing GDSL domain

7.49e-05

Response to drought stress

Peroxidase

1.80e-03

Response to oxidative stress, drought tolerance

Glutathione-related genes

5.44e-08

Response to oxidative stress, drought tolerance

Auxin related genes

3.80e-06

Plant height and roots

Interesting genes

Os12g0597000

SOS3-like calcium binding protein

Response to water deprivation, drought tolerance

Os12g0597700

WRKY DNA binding protein

Drought tolerance

Os11g0474600

terpenoid synthase

Tillering ability

Os04g0616400, Os04g0616600

Serine/threonine protein kinase

Drought tolerance

Os01g0646000, Os06g0184866, Os06g0185800

Pentatricopeptide repeat domain containing protein

Response to oxidative stress, drought tolerance

Os07g0449700

type A response regulator

Plant height and roots

Japonica specific EDGs

Enriched gene families or categories

Mitogen-activated protein kinase

1.37e-14

Response to biotic stress, like blast, and promoting root development

WRKY genes

0.03

Drought tolerance

Thioredoxin

0.04

Response to oxidative stress, drought tolerance

Interesting genes

Os09g0410500

homolog to teosinte-branched 1(tb1)

Tillering ability

  1. For the EDGs of the whole population and japonica specific EDGs, the enriched gene families and interesting genes in them are shown. And their potentially functional effects are indicated.