Skip to main content

Table 2 Clusters containing codons under positive selection before and after manual curation

From: Impact of recurrent gene duplication on adaptation of plant genomes

 

Clusters used in final analysis

Clusters under selection before manual curation (%)

Clusters under selection after manual curation (%)

Species

UP1

UP2

UP1

UP2

UP1

UP2

M. acuminata

36

107

1 (2.78)

6 (5.61)

0 (0.00)

4 (3.74)

O. sativa

7

145

1 (14.29)

29 (20.00)

1 (14.29)

11 (7.59)

B. distachyon

4

59

0 (0.00)

14 (23.73)

0 (0.00)

2 (3.39)

Z. mays

24

226

4 (16.67)

32 (14.16)

0 (0.00)

9 (3.98)

S. bicolor

4

93

0 (0.00)

9 (9.68)

0 (0.00)

4 (4.30)

V. vinifera

9

114

1 (11.11)

10 (8.77)

0 (0.00)

3 (2.63)

A. thaliana

13

138

0 (0.00)

25 (18.12)

0 (0.00)

14 (10.14)

P. trichocarpa

16

132

3 (18.75)

18 (13.64)

1 (6.25)

12 (9.09)

G. max

17

128

3 (17.65)

5 (3.91)

3 (17.65)

1 (0.78)

M. truncatula

30

370

5 (16.67)

49 (13.24)

4 (13.33)

21 (5.68)

Sum/average

160

1,512

18 (11.25)

197 (13.03)

9 (5.63)

81 (5.36)

UPall

1,672

215 (12.86)

90 (5.38)

SO1

167

1 (0.60)

0 (0.00)

SO2

1,203

3 (0.25)

0 (0.00)