Quantitative trait loci identification, fine mapping and gene expression profiling for ovicidal response to whitebacked planthopper (Sogatella furcifera Horvath) in rice (Oryza sativa L.)

Yang, Yaolong; Xu, Jie; Leng, Yujia; Xiong, Guosheng; Hu, Jiang; Zhang, Guangheng; Huang, Lichao; Wang, Lan; Guo, Longbiao; Li, Jiayang; Chen, Feng; Qian, Qian; Zeng, Dali

doi:10.1186/1471-2229-14-145

Table 3 Genes differentially expressed in the whitebacked planthopper-infested CJ06 and TN1 varieties

From: Quantitative trait loci identification, fine mapping and gene expression profiling for ovicidal response to whitebacked planthopper (Sogatella furcifera Horvath) in rice (Oryza sativa L.)

Putative function	Probe set ID	Locus ID	Fold-change
Putative function	Probe set ID	Locus ID	CJ(+/-)^a	TN(+/-)^b	(CJ+/TN+)^c
Defense and stress related genes
Pathogenesis-related thaumatin-like protein	Os.49615.1.S1_at	LOC_Os03g45960	15.26	5.91	5.31
Germin-like protein subfamily 1 precursor	Os.47320.1.A1_at	LOC_Os04g52720	19.24	6.31	2.90
Pathogenesis-related protein precursor	Os.51641.1.S1_x_at	LOC_Os07g03590	19.50	9.29	2.74
Pathogenesis-related protein PRB1precursor	Os.9421.1.S1_at	LOC_Os10g11500	50.58	7.40	6.99
Alpha-amylase/trypsin inhibitor	OsAffx.32171.3.S1_at	LOC_Os12g43490	6.93	2.02	19.50
Secondary metabolism
Terpene synthase	OsAffx.25825.1.S1_at	LOC_Os04g01810	7.61	2.86	2.28
Anthranilate N-benzoyltransferase protein 1	Os.49568.1.S1_at	LOC_Os04g56900	17.08	2.05	6.04
Agmatine coumaroyltransferase	Os.51179.1.S1_at	LOC_Os11g42290	6.58	2.29	2.36
Multicopper oxidase family protein	Os.17659.1.S1_at	LOC_Os12g15680	14.46	3.45	4.16
Genes involved in cell signaling
S-locus-like receptor protein kinase	Os.48003.1.A1_at	LOC_Os01g47840	8.73	2.79	2.70
ATP binding protein	Os.26226.1.S1_at	LOC_Os02g02780	7.77	2.35	2.33
TAK14	Os.778.2.S1_x_at	LOC_Os01g02700	2.60	-2.32	2.47
Leucine Rich Repeat family protein	OsAffx.20258.1.S1_at	LOC_Os10g33080	2.86	-2.03	5.25
Transcription factors and genes involved in RNA processing
NAC domain-containing protein 18	Os.802.1.S1_at	LOC_Os01g01430	6.10	2.08	2.62
Myb-like DNA-binding domain containing	Os.31381.1.S1_at	LOC_Os01g03720	5.26	2.02	2.78
Helix-loop-helix DNA-binding domain	Os.32770.1.S1_x_at	LOC_Os01g09930	7.10	2.79	3.19
NAC-domain containing protein 90	Os.34471.1.S1_at	LOC_Os01g64310	2.72	-2.04	3.92
Transcription factor MYC7E	Os.46443.1.S1_at	LOC_Os10g42430	2.55	-2.33	2.16
Genes implicated in hormone signaling
Auxin efflux carrier component 4	Os.2230.1.S1_at	LOC_Os02g50960	-6.78	-2.05	-3.34
Auxin-responsive protein IAA14	Os.8585.1.S1_at	LOC_Os03g53150	-6.79	-2.13	-2.03
Auxin responsive protein, expressed	Os.37213.1.S1_at	LOC_Os07g29310	-7.35	-3.07	-4.15
1-aminocyclopropane-1-carboxylate oxidase 1	Os.12201.2.S1_at	LOC_Os09g27820	-11.52	-4.11	-31.22
VQ motif family protein	Os.15204.1.S1_at	LOC_Os11g03660	-5.06	-2.14	-2.13
Two-component response regulator ARR8	Os.37430.1.S1_at	LOC_Os12g04500	-27.22	-4.40	-3.20

A combined criterion of a 3-fold or more change between CJ06 and TN1 was used to obtain genes with more than a 2-fold response to WBPH feeding. ^aratio of transcripts in WBPH-infested CJ06 to those in uninfested CJ06; ^bratio of transcripts in WBPH-infested TN1 to those in uninfested TN1; ^cratio of transcripts in the leaf sheaths of CJ06 to those in TN1 after feeding by WBPH. Positive and negative numerals indicate the gene expression in the infested leaf sheaths was up-regulated or down-regulated, respectively.

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ISSN: 1471-2229

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