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Table 3 Genes differentially expressed in the whitebacked planthopper-infested CJ06 and TN1 varieties

From: Quantitative trait loci identification, fine mapping and gene expression profiling for ovicidal response to whitebacked planthopper (Sogatella furcifera Horvath) in rice (Oryza sativa L.)

Putative function Probe set ID Locus ID Fold-change
CJ(+/-)a TN(+/-)b (CJ+/TN+)c
Defense and stress related genes      
Pathogenesis-related thaumatin-like protein Os.49615.1.S1_at LOC_Os03g45960 15.26 5.91 5.31
Germin-like protein subfamily 1 precursor Os.47320.1.A1_at LOC_Os04g52720 19.24 6.31 2.90
Pathogenesis-related protein precursor Os.51641.1.S1_x_at LOC_Os07g03590 19.50 9.29 2.74
Pathogenesis-related protein PRB1precursor Os.9421.1.S1_at LOC_Os10g11500 50.58 7.40 6.99
Alpha-amylase/trypsin inhibitor OsAffx.32171.3.S1_at LOC_Os12g43490 6.93 2.02 19.50
Secondary metabolism      
Terpene synthase OsAffx.25825.1.S1_at LOC_Os04g01810 7.61 2.86 2.28
Anthranilate N-benzoyltransferase protein 1 Os.49568.1.S1_at LOC_Os04g56900 17.08 2.05 6.04
Agmatine coumaroyltransferase Os.51179.1.S1_at LOC_Os11g42290 6.58 2.29 2.36
Multicopper oxidase family protein Os.17659.1.S1_at LOC_Os12g15680 14.46 3.45 4.16
Genes involved in cell signaling      
S-locus-like receptor protein kinase Os.48003.1.A1_at LOC_Os01g47840 8.73 2.79 2.70
ATP binding protein Os.26226.1.S1_at LOC_Os02g02780 7.77 2.35 2.33
TAK14 Os.778.2.S1_x_at LOC_Os01g02700 2.60 -2.32 2.47
Leucine Rich Repeat family protein OsAffx.20258.1.S1_at LOC_Os10g33080 2.86 -2.03 5.25
Transcription factors and genes involved in RNA processing
NAC domain-containing protein 18 Os.802.1.S1_at LOC_Os01g01430 6.10 2.08 2.62
Myb-like DNA-binding domain containing Os.31381.1.S1_at LOC_Os01g03720 5.26 2.02 2.78
Helix-loop-helix DNA-binding domain Os.32770.1.S1_x_at LOC_Os01g09930 7.10 2.79 3.19
NAC-domain containing protein 90 Os.34471.1.S1_at LOC_Os01g64310 2.72 -2.04 3.92
Transcription factor MYC7E Os.46443.1.S1_at LOC_Os10g42430 2.55 -2.33 2.16
Genes implicated in hormone signaling      
Auxin efflux carrier component 4 Os.2230.1.S1_at LOC_Os02g50960 -6.78 -2.05 -3.34
Auxin-responsive protein IAA14 Os.8585.1.S1_at LOC_Os03g53150 -6.79 -2.13 -2.03
Auxin responsive protein, expressed Os.37213.1.S1_at LOC_Os07g29310 -7.35 -3.07 -4.15
1-aminocyclopropane-1-carboxylate oxidase 1 Os.12201.2.S1_at LOC_Os09g27820 -11.52 -4.11 -31.22
VQ motif family protein Os.15204.1.S1_at LOC_Os11g03660 -5.06 -2.14 -2.13
Two-component response regulator ARR8 Os.37430.1.S1_at LOC_Os12g04500 -27.22 -4.40 -3.20
  1. A combined criterion of a 3-fold or more change between CJ06 and TN1 was used to obtain genes with more than a 2-fold response to WBPH feeding. aratio of transcripts in WBPH-infested CJ06 to those in uninfested CJ06; bratio of transcripts in WBPH-infested TN1 to those in uninfested TN1; cratio of transcripts in the leaf sheaths of CJ06 to those in TN1 after feeding by WBPH. Positive and negative numerals indicate the gene expression in the infested leaf sheaths was up-regulated or down-regulated, respectively.