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Table 1 Summary of the SNPs analyzed for scaffolds 1–8

From: The peach volatilome modularity is reflected at the genetic and environmental response levels in a QTL mapping population

  

Polymorphic SNPs

SNPs selected

Map distance (cM)

Marker density (cM/marker)

Scaffold

Total SNPs

SNPs (% of total)

MxR_01'

Granada'

MxR_01'

Granada'

MxR_01'

Granada'

MxR_01'

Granada'

Sc1

959

319 (33%)

282

37

26

0

75.01

0

2.89

X

Sc2

1226

461 (38%)

273

188

0

13

0

59.08

X

4.54

Sc3

700

336 (48%)

325

11

40

0

87.28

0

2.18

X

Sc4

1439

496 (34%)

269

227

29

10

69.95

22.46

2.41

2.25

Sc5

476

243 (51%)

196

47

14

8

50.8

39.61

3.63

4.95

Sc6

827

364 (44%)

188

176

15

20

61.18

75.75

4.08

3.79

Sc7

686

318 (46%)

168

150

21

16

70.45

50.87

3.35

3.18

Sc8

804

328 (41%)

269

59

33

7

65.37

16.70

1.98

2.39

TOTAL

7117

2865 (40%)

1970

895

178

74

480

264

  
  1. For each scaffold, the total number of SNPs present in the array (Total SNPs) and the number of polymorphic markers with the percentage of the total (in parentheses) are indicated. Also, for each parental map (‘ MxR_01’ and ‘ Granada’), the total number of polymorphic SNPs found at each scaffold and the number of SNPs selected for map construction are indicated. Map distance (in cM) indicates the length of the linkage group corresponding to each chromosome and the total map distance covered for both parental maps. Marker density indicates the distance between contiguous markers (on average) in each map. X indicates those cases where there were not enough markers to build a genetic map and for which marker density could therefore not be calculated.
  2. For each scaffold, the total number of SNPs present in the array (Total SNPs) and the number of polymorphic markers with the percentage of the total (in parentheses) are indicated. Also, for each parental map (‘ MxR_01’ and ‘ Granada’), the total number of polymorphic SNPs found at each scaffold and the number of SNPs selected for map construction are indicated. Map distance (in cM) indicates the length of the linkage group corresponding to each chromosome and the total map distance covered for both parental maps. Marker density indicates the distance between contiguous markers (on average) in each map. X indicates those cases where there were not enough markers to build a genetic map and for which marker density could therefore not be calculated.