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Table 2 Selected expression differences in pak choi seedlings 48 hours after application of methyl jasmonate

From: Functional identification of genes responsible for the biosynthesis of 1-methoxy-indol-3-ylmethyl-glucosinolate in Brassica rapa ssp. chinensis

 

Identifier

Log2-fold change

Comparison with Arabidopsissequences

Glucosinolate metabolism

JCVI_38382

7.225

Moderately similar to At1g54040, ESP, epithiospecifier protein

EX039068

5.199

Weakly similar to At4g31500, SUR2, CYP83B1, chytochrom P450 monooxygenase 83B1

JCVI_24334

4.326

Highly similar to At2g22330, CYP79B3, cytochrome P450 monooxygenase 79B3

JCVI_41905

4.265

Moderately similar to At4g39940, AKN2, APS-kinase 2

JCVI_10889

4.238

Moderately similar to At5g14200, 3-isopropylmalate dehydrogenase

JCVI_10648

3.943

Moderately similar to At4g39940, AKN2, APS-kinase 2

JCVI_1353

3.140

Moderately similar to At1g54020, myrosinase-associated protein

JCVI_16379

3.055

Highly similar to At4g39950, CYP79B2, cytochrome P450 monooxygenase 79B2

JCVI_33391

2.466

Highly similar to At4g39950, CYP79B2, cytochrome P450 monooxygenase 79B2

EV159250

2.317

Weakly similar to At1g52040, MBP1, myrosinase-binding protein 1

JCVI_2556

2.299

Weakly similar to At1g52030, MBP2, myrosinase-binding protein 2

JCVI_109

2.151

Moderately similar to At4g31500, SUR2, CYP83B1, chytochrom P450 monooxygenase 83B1

JCVI_31290

2.117

Moderately similar to At1g24100, UGT74B1 UDP-glucosyl transferase 74B1

JCVI_15640

1.969

Weakly similar to At1g62540, flavin-containing monooxygenase family protein

 

JCVI_3890

1.953

Moderately similar to At5g25980, TGG2, glucoside glucohydrolase 2

Candidate genes

JCVI_7218

5.409

Moderately similar to At4g37410, CYP81F4, cytochrome P450 monooxygenase 81F4

EV124048

5.392

Weakly similar to At4g35160, O-methyltransferase family protein

EV125432

5.273

Moderately similar to At4g37410, CYP81F4, cytochrome P450 monooxygenase 81F4

JCVI_33618

5.269

Moderatey similar to At4g35160, O-methyltransferase family 2 protein

JCVI_40877

4.207

Moderately similar to At4g37430, CYP81F1, CYP91A2, cytochrome P450 monooxygenase 81F1

JCVI_39399

3.658

Moderately similar to At1g13080, CYP71B2, cytochrome P450 monooxygenase 71B2

JCVI_12863

3.217

Weakly similar to At5g42590, CYP71A16, cytochrome P450 monooxygenase 71A16

EV170929

2.549

Moderately similar to At3g28740, CYP81D11, cytochrome P450 monooxygenase 81D11

 

JCVI_8990

1.808

Moderately similar to At5g36220, CYP91A1, CYP81D1, cytochrome P450 monooxygenase

  1. The Brassica 95 K unigene set was compared to Arabidopsis thaliana TAIR9 genome release and mapped to MapMan bins. Respective Brassica identifiers are shown, and relative changes to controls are given as log2-ratios. Grading of sequence similarity scores of the comparison with Arabidopsis sequences is as follows: highly similar, 501–1000; moderately similar, 201–500; weakly similar, 101–200. Genes with significantly altered expression and similarity to Arabidopsis genes with function in GS metabolism and genes with significantly altered expression and similarity to candidate genes of the gene families of cytochrome P450 monooxygenases and O-methyltransferasese are listed.