Skip to main content

Table 1 Identification of novel NB-LRR genes from RenSeq data

From: Defining the full tomato NB-LRR resistance gene repertoire using genomic and cDNA RenSeq

  Mapping Andolfo et al.[7] Novel Total
  Heinz 1706 reads Annotation NB-LRR NB-LRR
Ch00 823,314 3 (2) 1 3
Ch01 369,154 17 (14) 7 21
Ch02 383,004 24 (16) 7 23
Ch03 334,034 8 (6) 3 9
Ch04 430,876 55 (40) 16 56
Ch05 495,739 39 (34) 11 45
Ch06 361,718 19 (17) 3 20
Ch07 202,113 21 (11) 8 19
Ch08 276,354 13 (11) 2 13
Ch09 230,882 16 (14) 9 23
Ch10 247,821 23 (19) 8 27
Ch11 451,661 34 (22) 20 42
Ch12 260,933 22 (15) 10 25
Total 4,867,603 294 (221) 105 326
  1. BWA mapping of NB-LRR-enriched Illumina PE 250-bp MiSeq-reads to the reference S. lycopersicum Heinz 1706 aided the verification of previously reported NB-LRR genes [7] (verified genes in brackets), as well as the identification of novel NB-LRR encoding sequences.