Table 1 Identification of novel NB-LRR genes from RenSeq data
From: Defining the full tomato NB-LRR resistance gene repertoire using genomic and cDNA RenSeq
Mapping | Andolfo et al.[7] | Novel | Total | |
|---|---|---|---|---|
Heinz 1706 reads | Annotation | NB-LRR | NB-LRR | |
Ch00 | 823,314 | 3 (2) | 1 | 3 |
Ch01 | 369,154 | 17 (14) | 7 | 21 |
Ch02 | 383,004 | 24 (16) | 7 | 23 |
Ch03 | 334,034 | 8 (6) | 3 | 9 |
Ch04 | 430,876 | 55 (40) | 16 | 56 |
Ch05 | 495,739 | 39 (34) | 11 | 45 |
Ch06 | 361,718 | 19 (17) | 3 | 20 |
Ch07 | 202,113 | 21 (11) | 8 | 19 |
Ch08 | 276,354 | 13 (11) | 2 | 13 |
Ch09 | 230,882 | 16 (14) | 9 | 23 |
Ch10 | 247,821 | 23 (19) | 8 | 27 |
Ch11 | 451,661 | 34 (22) | 20 | 42 |
Ch12 | 260,933 | 22 (15) | 10 | 25 |
Total | 4,867,603 | 294 (221) | 105 | 326 |