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Table 1 Significantly (FDR < 0.05) Cu-regulated transcription factors (TFs) in E. siliculosus

From: Transcriptomic and metabolomic analysis of copper stress acclimation in Ectocarpus siliculosus highlights signaling and tolerance mechanisms in brown algae

Gene ID TF family Domain 1 Domain 2 Annotation Log2-ratio 4 h Log2-ratio 8 h Meta-analysis
Esi0219_0040 bZIP bZIP_1 bZIP_2 Conserved unknown protein 1.1 0.6 Cu_Oxi_up
Esi0051_0089 C2H2 zf-C2H2 - Conserved unknown protein 1.2 0.3 Cu_up
Esi0348_0030 C2H2 zf-AN1 zfAN1 Arsenite inducible RNA associated protein AIP-1-related SAP 1.1 0.7 Cu_Hypo_Oxi_up
Esi0002_0015 C2H2 zf-AN1 - Arsenite inducible RNA associated protein AIP-1-related SAP 1.8 1.8 Cu_up
Esi0513_0010 C2H2 zf-C2H2 - Similar to metal response element-binding transcription factor-1 MTF1 1.4 0.8 Cu_Oxi_up
Esi0301_0006 C2H2 R3H - Conserved unknown protein 2.0 1.4 Cu_Oxi_up
Esi0040_0071 C2H2 C2H2 - Expressed unknown protein 1.8 1.8 Cu_Hyper_oxi_up
Esi0071_0018 C2H2 C2H2 PUB PUB domain, zinc finger protein thioredoxin 1.5 1.3 Cu_Hypo_up
Esi0100_0023 CCHC CCHC - Conserved unknown protein 1.3 -0.1 Cu_Hypo_oxi_up
Esi0151_0061 CCHC CCHC - Conserved unknown protein 1.4 0.7 Cu_Hypo_up
Esi0118_0050 C3H zf-CCCH - Conserved unknown protein 1.1 0.3 Cu_up
Esi0201_0038 CCAAT_HAP3 NF-YB - Conserved unknown protein 1.8 1.4 Cu_Hypo_up
Esi0292_0018 FHA FHA - Nibrin 1.3 0.6 Cu_up
Esi0041_0031 GNAT Acetyltransf_1 - Conserved unknown 1.3 1.7 Cu_up
Esi0226_0031 RWP-RK RWP-RK - NIN-like transcription factor 1.1 0.3 Cu_up
Esi0100_0085 RWP-RK RWP-RK - NIN-like transcription factor 4 1.4 0.5 Cu_up
Esi0004_0202 SWI/SNF_SNF2 Helicase_C SNF2_N DEAD-like helicase 0.9 1.1 Cu_up
Esi0071_0075 Zn_clus Zn_clus - Conserved unknown 3.1 1.6 Cu_Oxi_up
Esi0071_0081 Zn_clus Zn_clus - Conserved unknown 1.4 0.4 Cu_Oxi_up
Esi0279_0021 HSF HSF - Heat Shock transcription factor -4.7 -2.0 Cu_down
Esi0149_0075 JmjC JmjC - Transcription factor jumonji/aspartyl beta-hydroxylase -1.3 -0.9 Cu_down
Esi0290_0010 mTERF mTERF - Conserved unknown protein -2.7 -0.7 Cu_Hypo_Oxi_down
Esi0095_0057 MYB-related Myb - Conserved unknown protein -2.4 -1.3 Cu_Hypo_Oxi_down
Esi0013_0140 RWP-RK RWP-RK - NIN-like 6 -2.6 -1.6 Cu_Hypo_Oxi_down
Esi0356_0029 AP2/EREBP AP2 - Pathogenesis-related transcriptional factor and ERF -1.9 -1.1 All_down
  1. Log2-ratios represent the means of three biological replicates. In the column “Meta-analysis”, Cu is for copper stress, Oxi for oxidative stress, Hyper for hypersaline stress, and Hypo for hyposaline stress condition. The direction of the changes under these different treatments is indicated by up and down for induction or repression, respectively.
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BMC Plant Biology

ISSN: 1471-2229

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