Skip to main content

Table 1 Significantly (FDR < 0.05) Cu-regulated transcription factors (TFs) in E. siliculosus

From: Transcriptomic and metabolomic analysis of copper stress acclimation in Ectocarpus siliculosus highlights signaling and tolerance mechanisms in brown algae

Gene ID

TF family

Domain 1

Domain 2

Annotation

Log2-ratio 4 h

Log2-ratio 8 h

Meta-analysis

Esi0219_0040

bZIP

bZIP_1

bZIP_2

Conserved unknown protein

1.1

0.6

Cu_Oxi_up

Esi0051_0089

C2H2

zf-C2H2

-

Conserved unknown protein

1.2

0.3

Cu_up

Esi0348_0030

C2H2

zf-AN1

zfAN1

Arsenite inducible RNA associated protein AIP-1-related SAP

1.1

0.7

Cu_Hypo_Oxi_up

Esi0002_0015

C2H2

zf-AN1

-

Arsenite inducible RNA associated protein AIP-1-related SAP

1.8

1.8

Cu_up

Esi0513_0010

C2H2

zf-C2H2

-

Similar to metal response element-binding transcription factor-1 MTF1

1.4

0.8

Cu_Oxi_up

Esi0301_0006

C2H2

R3H

-

Conserved unknown protein

2.0

1.4

Cu_Oxi_up

Esi0040_0071

C2H2

C2H2

-

Expressed unknown protein

1.8

1.8

Cu_Hyper_oxi_up

Esi0071_0018

C2H2

C2H2

PUB

PUB domain, zinc finger protein thioredoxin

1.5

1.3

Cu_Hypo_up

Esi0100_0023

CCHC

CCHC

-

Conserved unknown protein

1.3

-0.1

Cu_Hypo_oxi_up

Esi0151_0061

CCHC

CCHC

-

Conserved unknown protein

1.4

0.7

Cu_Hypo_up

Esi0118_0050

C3H

zf-CCCH

-

Conserved unknown protein

1.1

0.3

Cu_up

Esi0201_0038

CCAAT_HAP3

NF-YB

-

Conserved unknown protein

1.8

1.4

Cu_Hypo_up

Esi0292_0018

FHA

FHA

-

Nibrin

1.3

0.6

Cu_up

Esi0041_0031

GNAT

Acetyltransf_1

-

Conserved unknown

1.3

1.7

Cu_up

Esi0226_0031

RWP-RK

RWP-RK

-

NIN-like transcription factor

1.1

0.3

Cu_up

Esi0100_0085

RWP-RK

RWP-RK

-

NIN-like transcription factor 4

1.4

0.5

Cu_up

Esi0004_0202

SWI/SNF_SNF2

Helicase_C

SNF2_N

DEAD-like helicase

0.9

1.1

Cu_up

Esi0071_0075

Zn_clus

Zn_clus

-

Conserved unknown

3.1

1.6

Cu_Oxi_up

Esi0071_0081

Zn_clus

Zn_clus

-

Conserved unknown

1.4

0.4

Cu_Oxi_up

Esi0279_0021

HSF

HSF

-

Heat Shock transcription factor

-4.7

-2.0

Cu_down

Esi0149_0075

JmjC

JmjC

-

Transcription factor jumonji/aspartyl beta-hydroxylase

-1.3

-0.9

Cu_down

Esi0290_0010

mTERF

mTERF

-

Conserved unknown protein

-2.7

-0.7

Cu_Hypo_Oxi_down

Esi0095_0057

MYB-related

Myb

-

Conserved unknown protein

-2.4

-1.3

Cu_Hypo_Oxi_down

Esi0013_0140

RWP-RK

RWP-RK

-

NIN-like 6

-2.6

-1.6

Cu_Hypo_Oxi_down

Esi0356_0029

AP2/EREBP

AP2

-

Pathogenesis-related transcriptional factor and ERF

-1.9

-1.1

All_down

  1. Log2-ratios represent the means of three biological replicates. In the column “Meta-analysis”, Cu is for copper stress, Oxi for oxidative stress, Hyper for hypersaline stress, and Hypo for hyposaline stress condition. The direction of the changes under these different treatments is indicated by up and down for induction or repression, respectively.