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Table 2 Consensus QTLs for seed weight and silique length obtained by meta-analysis

From: A combined linkage and regional association mapping validation and fine mapping of two major pleiotropic QTLs for seed weight and silique length in rapeseed (Brassica napus L.)

Consensus QTL

Linkage group

LOD

R2 (%)

Peak position

Confidence interval (2-LOD)

Additive effecta

Experiments code (m, b, w) b

cqSW.A01-1

A01

4.8-5.5

1.7-1.8

32.3

31.2-33.5

-

W11F2:3(m,w)

cqSW.A01-2

A01

2.7-3.5

6.2-6.7

43.9

41.6-46.2

-

W10F2:3(b)|W11F2:3(b,w)

cqSW.A01-3

A01

3.7-3.7

0.8-1.7

145.3

144.0-146.6

+

W11F2:3(m,b)

cqSW.A03-1

A03

6.2

15.1

54.2

54.0-55.5

0.42

W09F2(m)

cqSW.A03-2

A03

2.6-3.0

9.1-11.1

79.8

78.7-80.9

+

W10F2:3(b,w)

cqSW.A04

A04

3.8-4.0

0.7-2.5

76

75.5-76.5

+

W11F2:3(m,w)

cqSW.A07

A07

2.6-3.6

4.0-11.7

76.2

72.9-79.6

±

W10F2:3(b)|W11F2:3(m,b,w)

cqSW.A08

A08

2.7-5.1

1.1-13.9

22

20.5-23.4

±

W09F2(m)|W10F2:3(b,w)|W11F2:3(b,w)

cqSW.A09-1

A09

2.7-10.0

9.1-67.1

42

40.9-43.1

-

W09F2(m)|W10F2:3(m,b,w)|W11F2:3(m,b,w)|X11F2:3(m)|X11F2:4(m,b,w)

cqSW.A09-2

A09

9.3

13.4

86.3

84.3-88.2

0.34

W10F2:3(m)

cqSW.A09-3

A09

5.8-9.0

7.2-26.9

109.4

106.5-112.3

+

W10F2:3(m,b,w)|W11F2:3(m,w)|X11F2:4(m,b,w)

cqSW.C02

C02

3.6-4.4

7.6-1.9

27.2

26.7-27.8

-

W11F2:3(m,w)

cqSW.C06

C06

4.3

3.4

5

0-10.5

-0.19

X11F2:4(m)

cqSL.A04-1

A04

7.1

5.9

27.8

26.8-28.0

-8.61

X11F2:3

cqSL.A04-2

A04

7.2

20.1

37.5

35.6-39.5

-4.77

X11F2:3

cqSL.A06

A06

6.2

9

23

17.3-25.6

6.19

X11F2:4

cqSL.A09-1

A09

4.5-7.8

7.8-544

45.1

44.0-46.2

±

W09F2|W10F2:3|W11F2:3|X11F2:3|X11F2:4

cqSL.A09-2

A09

10.0-15.4

9.9-16.6

109

102.5-115.6

+

W09F2|W10F2:3

cqSL.C01

C01

2.6-6.6

2.1-9.7

40.2

36.9-43.5

-

W09F2|W10F2:3|W11F2:3

cqSL.C02-1

C02

4.4

7.7

27.2

25.9-28.7

-9.8

W10F2:3

cqSL.C02-2

C02

4.1

5.1

35.9

31.6-42.2

-3.37

W11F2:3

cqSL.C02-3

C02

5.4

6.3

81.5

80.7-88.0

-4.58

X11F2:3

  1. a: “+”, “-” and “±” indicate the direction of the additive effect.
  2. b: m, b and w represent the main raceme, raceme branch and whole-plant thousand seed weight, respectively.