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Table 6 Summary of changes in methylation during in vitro development for genome features

From: Methylome reorganization during in vitro dedifferentiation and regeneration of Populus trichocarpa

FEATURE Explant to callus Callus to regen
Whole genome (tiled windows) + 12% - 22%
Intergenic spaces - 3% - 24%
Gene promoters - 10% - 27%
5’UTRs - 48% + 324%
3’ UTRs + 8% + 86%
Gene bodies + 47% - 44%
Transposable elements + 80% + 240%
  1. Data is changes in percent of genes called methylated by the negative binomial method at a false discovery rate of 10%. Calculated as: 100*[(Number of genes called in tissue 1 – number called in tissue 2) / mean number of genes called in tissue 1].