No. methylated 1 kb windows
|
---|
By tissue
|
RPKM
|
NB
|
Common
|
---|
Internode explant
|
55, 036
|
92, 401
|
52, 566 (55.4%)
|
Callus
|
51, 886
|
81, 444
|
46, 863 (54.2%)
|
Regen internode
|
42, 511
|
63, 722
|
39, 384 (58.9%)
|
- Numbers are counts of windows called methylated compared to non-immunoprecipitated control by one of two methods: RPKM at a 1% false discovery rate, or negative binomial analysis (FDR of 10%). The P. trichocarpa genome is comprised of 378,536 windows. Percentage of common windows was calculated by dividing the total number of windows called by both methods by the total of those called by either method.