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Table 2 Genome methylation tallied over 1 kb tiled genome windows, with tissues pooled

From: Methylome reorganization during in vitro dedifferentiation and regeneration of Populus trichocarpa

No. methylated 1 kb windows
All tissues RPKM NB Common
Methylated 33, 537 56, 861 30,727 (51.57%)
Unmethylated 261, 452 267, 876 239, 225 (82.5%)
Tissue specific 33, 921 44, 910 18, 755(31.2%)
Tissue-specific proportion 0,50 0.44  
  1. Numbers are counts of windows called methylated compared to non-immunoprecipitated control by one of two methods: RPKM at a 1% false discovery rate, or negative binomial analysis (FDR of 10%). The P. trichocarpa genome is comprised of 378,536 windows. Percentage of common windows was calculated by dividing the total number of windows called by both methods by the total of those called by either method.