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Table 1 Expression of ERF genes in syncytia and control root segments according to GeneChip data

From: Overexpression of the transcription factor RAP2.6 leads to enhanced callose deposition in syncytia and enhanced resistance against the beet cyst nematode Heterodera schachtiiin Arabidopsis roots

ID

Gene

Syn

Root

Syn vs root

q

At1g43160

RAP2.6

0.91

9.97

−9.06

9.8E-8

At3g50260

CEJ1/ DEAR1

3.78

9.89

−6.11

7.1E-5

At2g20880

AtERF53

2.13

7.73

−5.61

9.8E-8

At1g78080

WIND1/RAP2.4

3.35

8.43

−5.08

1.0E-5

At5g25810

TINY

2.08

6.33

−4.24

8.2E-7

At5g05410

DREB2A

5.67

9.12

−3.45

0.10%

At1g22190

WIND2

4.31

7.54

−3.23

7.3E-5

At1g53910

RAP2.12

4.33

6.50

−2.17

3.0%

At5g44210

AtERF9

3.20

5.34

−2.14

0.44%

At1g06160

ORA59

3.25

5.37

−2.12

0.04%

At4g17490

AtERF6

4.12

6.21

−2.08

1.7%

At4g39780

 

3.71

5.68

−1.97

0.07%

At5g19790

RAP2.11

3.59

5.55

−1.96

0.01%

At2g23340

 

9.41

11.26

−1.85

2.8%

At5g61590

 

5.81

7.63

−1.82

1.7%

At5g61600

 

5.67

7.41

−1.74

1.5%

At5g47230

AtERF5

3.66

5.16

−1.50

0.53%

At3g20310

AtERF7

5.64

7.05

−1.41

2.9%

At1g64380

 

2.25

3.58

−1.34

1.4%

At4g36900

RAP2.10

6.29

7.41

−1.12

3.0%

At5g67190

 

4.82

5.93

−1.11

41.7%

At2g44940

 

4.61

5.70

−1.09

0.61%

At4g16750

 

2.80

3.83

−1.03

0.04%

At1g72360

 

8.47

9.50

−1.02

14.2%

At5g07580

 

5.65

6.63

−0.98

0.10%

At4g17500

AtERF1

5.75

6.73

−0.98

0.89%

At3g14230

RAP2.2

4.88

5.76

−0.88

23.4%

At2g25820

 

2.70

3.54

−0.84

2.7%

At4g25480

 

3.04

3.87

−0.83

2.3%

At3g61630

 

2.18

2.95

−0.77

0.61%

At5g18560

 

3.10

3.86

−0.76

0.81%

At1g22985

 

6.17

6.91

−0.74

9.6%

At5g18450

 

4.03

4.76

−0.73

7.7%

At3g15210

AtERF4/RAP2.5

5.14

5.81

−0.67

2.3%

At5g51990

CBF4/DREB1D

3.20

3.74

−0.55

2.9%

At1g53170

AtERF8

4.33

4.75

−0.42

13.9%

At5g67000

 

4.04

4.45

−0.41

44.2%

At5g13910

LEP

2.96

3.35

−0.39

4.1%

At1g46768

RAP2.1

3.70

4.08

−0.38

2.7%

At2g46310

 

3.41

3.74

−0.34

13.5%

At2g40220

ABI4

3.27

3.58

−0.31

7.7%

At3g23230

TDR1

2.93

3.24

−0.31

30.1%

At4g25490

CBF1/DREB1B

3.30

3.61

−0.31

8.7%

At2g31230

AtERF15

3.59

3.87

−0.29

14.6%

At4g28140

 

2.75

3.02

−0.27

16.6%

At3g60490

 

3.71

3.97

−0.25

30.1%

At4g11140

 

2.67

2.91

−0.24

20.2%

At5g25390

SHN3

3.97

4.20

−0.23

44.2%

At1g15360

WIN1/SHN1

3.06

3.26

−0.20

30.7%

At5g65130

WIND4

2.44

2.64

−0.20

14.2%

At4g18450

 

3.34

3.53

−0.19

19.5%

At5g11590

 

2.46

2.65

−0.19

27.2%

At1g75490

 

2.64

2.82

−0.19

38.5%

At1g44830

 

3.14

3.30

−0.16

41.7%

At1g33760

 

2.14

2.29

−0.14

30.7%

At4g31060

 

3.87

3.99

−0.13

80.3%

At5g67010

 

2.62

2.74

−0.12

45.1%

At1g63030

DDF1

1.97

2.07

−0.10

48.3%

At1g22810

 

2.26

2.35

−0.09

52.8%

At3g23220

 

3.52

3.61

−0.09

52.8%

At5g43410

 

3.93

4.01

−0.08

67.5%

At1g28160

 

2.49

2.55

−0.06

70.3%

At1g28370

AtERF11

5.00

5.05

−0.05

92.5%

At2g22200

 

2.70

2.75

−0.05

80.3%

At5g25190

 

3.06

3.11

−0.05

80.3%

At5g07310

 

3.11

3.15

−0.04

86.9%

At1g80580

 

3.17

3.21

−0.04

91.2%

At1g77640

 

4.41

4.44

−0.03

91.2%

At1g12630

 

4.85

4.88

−0.03

91.2%

At3g16280

 

3.97

3.99

−0.02

91.2%

At2g36450

 

3.01

3.03

−0.02

91.2%

At2g35700

 

2.78

2.80

−0.02

91.6%

At1g01250

 

3.24

3.24

0.00

99.3%

At4g25470

CBF2/DREB1C

4.30

4.30

0.01

96.8%

At1g50640

AtERF3

2.95

2.94

0.01

95.6%

At3g57600

 

2.73

2.70

0.03

91.2%

At1g12610

 

2.58

2.55

0.03

91.2%

At2g33710

 

2.82

2.78

0.04

78.0%

At3g23240

ERF1

3.49

3.45

0.05

81.8%

At2g20350

 

2.61

2.56

0.05

86.9%

At1g19210

 

3.22

3.14

0.08

73.9%

At5g53290

 

3.45

3.36

0.10

67.4%

At2g44840

AtERF13

3.75

3.65

0.10

67.0%

At1g68550

 

5.06

4.93

0.13

53.9%

At1g36060

WIND3

4.21

4.07

0.15

50.5%

At5g52020

 

3.87

3.69

0.18

56.1%

At1g28360

AtERF12

2.84

2.63

0.21

16.6%

At4g32800

 

3.70

3.48

0.22

14.2%

At3g11020

DREB2B

4.75

4.51

0.24

25.4%

At5g47220

AtERF2

4.12

3.87

0.26

18.9%

At1g25470

 

5.06

4.79

0.26

36.0%

At2g38340

DREB2E

2.86

2.58

0.27

9.6%

At1g74930

 

3.78

3.35

0.43

5.7%

At4g23750

 

3.72

3.28

0.44

14.2%

At1g71130

 

6.75

6.27

0.48

14.2%

At3g25890

 

3.96

3.37

0.59

7.1%

At5g51190

 

5.43

4.82

0.61

11.4%

At5g61890

 

4.86

4.25

0.62

0.89%

At1g71450

 

3.23

2.58

0.65

0.73%

At2g47520

 

4.36

3.62

0.74

8.3%

At1g77200

 

3.18

2.43

0.75

0.61%

At5g13330

 

6.03

5.17

0.85

2.2%

At1g21910

 

4.56

3.58

0.98

1.4%

At4g34410

 

4.40

2.84

1.56

0.77%

At3g16770

AtEBP/RAP2.3

11.15

9.34

1.81

1.7%

At4g13620

 

-

-

  

At4g06746

RAP2.9

-

-

  

At5g21960

 

-

-

  

At1g71520

 

-

-

  

At1g63040

 

-

-

  

At2g40350

DREB2H

-

-

  

At2g40340

 

-

-

  

At5g11190

SHN2

-

-

  

At4g27950

 

-

-

  

At1g49120

 

-

-

  

At1g03800

AtERF10

-

-

  

At1g12890

 

-

-

  

At1g12980

ESR1/DRN

-

-

  

At1g24590

 

-

-

  

At1g04370

AtERF14

-

-

  

At5g50080

 

-

-

  

At5g64750

ABR1

-

-

  
  1. The data for microaspirated syncytia at 5 dpi and 15 dpi were compared with control roots (the elongation zone without root tip was used as control). The third and fourth columns show the normalized expression values on a log2 scale. The differences (fold changes) between the pairwise samples displayed (fifth column) are accordingly normalized log2 ratios (see the Online Methods section for details). The q-values in column 6 indicate significance after correction for multiple testing controlling the False Discovery Rate. Genes with a significant up- or downregulation (false discovery rate < 5%) are shown in bold. A dash (−) indicates that the gene is not represented on the GeneChip.
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BMC Plant Biology

ISSN: 1471-2229

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