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Table 1 Expression of ERF genes in syncytia and control root segments according to GeneChip data

From: Overexpression of the transcription factor RAP2.6 leads to enhanced callose deposition in syncytia and enhanced resistance against the beet cyst nematode Heterodera schachtiiin Arabidopsis roots

ID Gene Syn Root Syn vs root q
At1g43160 RAP2.6 0.91 9.97 −9.06 9.8E-8
At3g50260 CEJ1/ DEAR1 3.78 9.89 −6.11 7.1E-5
At2g20880 AtERF53 2.13 7.73 −5.61 9.8E-8
At1g78080 WIND1/RAP2.4 3.35 8.43 −5.08 1.0E-5
At5g25810 TINY 2.08 6.33 −4.24 8.2E-7
At5g05410 DREB2A 5.67 9.12 −3.45 0.10%
At1g22190 WIND2 4.31 7.54 −3.23 7.3E-5
At1g53910 RAP2.12 4.33 6.50 −2.17 3.0%
At5g44210 AtERF9 3.20 5.34 −2.14 0.44%
At1g06160 ORA59 3.25 5.37 −2.12 0.04%
At4g17490 AtERF6 4.12 6.21 −2.08 1.7%
At4g39780   3.71 5.68 −1.97 0.07%
At5g19790 RAP2.11 3.59 5.55 −1.96 0.01%
At2g23340   9.41 11.26 −1.85 2.8%
At5g61590   5.81 7.63 −1.82 1.7%
At5g61600   5.67 7.41 −1.74 1.5%
At5g47230 AtERF5 3.66 5.16 −1.50 0.53%
At3g20310 AtERF7 5.64 7.05 −1.41 2.9%
At1g64380   2.25 3.58 −1.34 1.4%
At4g36900 RAP2.10 6.29 7.41 −1.12 3.0%
At5g67190   4.82 5.93 −1.11 41.7%
At2g44940   4.61 5.70 −1.09 0.61%
At4g16750   2.80 3.83 −1.03 0.04%
At1g72360   8.47 9.50 −1.02 14.2%
At5g07580   5.65 6.63 −0.98 0.10%
At4g17500 AtERF1 5.75 6.73 −0.98 0.89%
At3g14230 RAP2.2 4.88 5.76 −0.88 23.4%
At2g25820   2.70 3.54 −0.84 2.7%
At4g25480   3.04 3.87 −0.83 2.3%
At3g61630   2.18 2.95 −0.77 0.61%
At5g18560   3.10 3.86 −0.76 0.81%
At1g22985   6.17 6.91 −0.74 9.6%
At5g18450   4.03 4.76 −0.73 7.7%
At3g15210 AtERF4/RAP2.5 5.14 5.81 −0.67 2.3%
At5g51990 CBF4/DREB1D 3.20 3.74 −0.55 2.9%
At1g53170 AtERF8 4.33 4.75 −0.42 13.9%
At5g67000   4.04 4.45 −0.41 44.2%
At5g13910 LEP 2.96 3.35 −0.39 4.1%
At1g46768 RAP2.1 3.70 4.08 −0.38 2.7%
At2g46310   3.41 3.74 −0.34 13.5%
At2g40220 ABI4 3.27 3.58 −0.31 7.7%
At3g23230 TDR1 2.93 3.24 −0.31 30.1%
At4g25490 CBF1/DREB1B 3.30 3.61 −0.31 8.7%
At2g31230 AtERF15 3.59 3.87 −0.29 14.6%
At4g28140   2.75 3.02 −0.27 16.6%
At3g60490   3.71 3.97 −0.25 30.1%
At4g11140   2.67 2.91 −0.24 20.2%
At5g25390 SHN3 3.97 4.20 −0.23 44.2%
At1g15360 WIN1/SHN1 3.06 3.26 −0.20 30.7%
At5g65130 WIND4 2.44 2.64 −0.20 14.2%
At4g18450   3.34 3.53 −0.19 19.5%
At5g11590   2.46 2.65 −0.19 27.2%
At1g75490   2.64 2.82 −0.19 38.5%
At1g44830   3.14 3.30 −0.16 41.7%
At1g33760   2.14 2.29 −0.14 30.7%
At4g31060   3.87 3.99 −0.13 80.3%
At5g67010   2.62 2.74 −0.12 45.1%
At1g63030 DDF1 1.97 2.07 −0.10 48.3%
At1g22810   2.26 2.35 −0.09 52.8%
At3g23220   3.52 3.61 −0.09 52.8%
At5g43410   3.93 4.01 −0.08 67.5%
At1g28160   2.49 2.55 −0.06 70.3%
At1g28370 AtERF11 5.00 5.05 −0.05 92.5%
At2g22200   2.70 2.75 −0.05 80.3%
At5g25190   3.06 3.11 −0.05 80.3%
At5g07310   3.11 3.15 −0.04 86.9%
At1g80580   3.17 3.21 −0.04 91.2%
At1g77640   4.41 4.44 −0.03 91.2%
At1g12630   4.85 4.88 −0.03 91.2%
At3g16280   3.97 3.99 −0.02 91.2%
At2g36450   3.01 3.03 −0.02 91.2%
At2g35700   2.78 2.80 −0.02 91.6%
At1g01250   3.24 3.24 0.00 99.3%
At4g25470 CBF2/DREB1C 4.30 4.30 0.01 96.8%
At1g50640 AtERF3 2.95 2.94 0.01 95.6%
At3g57600   2.73 2.70 0.03 91.2%
At1g12610   2.58 2.55 0.03 91.2%
At2g33710   2.82 2.78 0.04 78.0%
At3g23240 ERF1 3.49 3.45 0.05 81.8%
At2g20350   2.61 2.56 0.05 86.9%
At1g19210   3.22 3.14 0.08 73.9%
At5g53290   3.45 3.36 0.10 67.4%
At2g44840 AtERF13 3.75 3.65 0.10 67.0%
At1g68550   5.06 4.93 0.13 53.9%
At1g36060 WIND3 4.21 4.07 0.15 50.5%
At5g52020   3.87 3.69 0.18 56.1%
At1g28360 AtERF12 2.84 2.63 0.21 16.6%
At4g32800   3.70 3.48 0.22 14.2%
At3g11020 DREB2B 4.75 4.51 0.24 25.4%
At5g47220 AtERF2 4.12 3.87 0.26 18.9%
At1g25470   5.06 4.79 0.26 36.0%
At2g38340 DREB2E 2.86 2.58 0.27 9.6%
At1g74930   3.78 3.35 0.43 5.7%
At4g23750   3.72 3.28 0.44 14.2%
At1g71130   6.75 6.27 0.48 14.2%
At3g25890   3.96 3.37 0.59 7.1%
At5g51190   5.43 4.82 0.61 11.4%
At5g61890   4.86 4.25 0.62 0.89%
At1g71450   3.23 2.58 0.65 0.73%
At2g47520   4.36 3.62 0.74 8.3%
At1g77200   3.18 2.43 0.75 0.61%
At5g13330   6.03 5.17 0.85 2.2%
At1g21910   4.56 3.58 0.98 1.4%
At4g34410   4.40 2.84 1.56 0.77%
At3g16770 AtEBP/RAP2.3 11.15 9.34 1.81 1.7%
At4g13620   - -   
At4g06746 RAP2.9 - -   
At5g21960   - -   
At1g71520   - -   
At1g63040   - -   
At2g40350 DREB2H - -   
At2g40340   - -   
At5g11190 SHN2 - -   
At4g27950   - -   
At1g49120   - -   
At1g03800 AtERF10 - -   
At1g12890   - -   
At1g12980 ESR1/DRN - -   
At1g24590   - -   
At1g04370 AtERF14 - -   
At5g50080   - -   
At5g64750 ABR1 - -   
  1. The data for microaspirated syncytia at 5 dpi and 15 dpi were compared with control roots (the elongation zone without root tip was used as control). The third and fourth columns show the normalized expression values on a log2 scale. The differences (fold changes) between the pairwise samples displayed (fifth column) are accordingly normalized log2 ratios (see the Online Methods section for details). The q-values in column 6 indicate significance after correction for multiple testing controlling the False Discovery Rate. Genes with a significant up- or downregulation (false discovery rate < 5%) are shown in bold. A dash (−) indicates that the gene is not represented on the GeneChip.