Table 3 Annotated list of non-anthocyanin pathway genes in the maize genome with promoters containing all 5 of the anthocyanin/phlobaphene-related motifs predicted by Promzea (Motifs 1–5)
Maize ID | Annotation (PFAM ID, Maize GDB) |
|---|---|
Branched amino acid phenylpropanoid pathway | |
GRMZM2G153536 | Aminotransferase class IV -- Branched-chain-amino-acid aminotransferase |
GRMZM2G055899 | Aminotransferase class IV (branched-chain amino acid aminotransferase 5) |
GRMZM2G074604 | Phenylalanine ammonia lyase 1 (PAL1) |
Putative light signaling | |
GRMZM2G104920 | COP1, putative; Zinc finger, C3HC4 type (RING finger) |
GRMZM2G062541 | HLH DNA-binding domain related to phytochrome interacting factor 3 (PIF3) |
Putative gibberellin | |
GRMZM2G013016 | Gibberellin response modulator protein (GRAS family transcription factor) |
GRMZM2G021051 | 2OG-Fe(II) oxygenase superfamily related to gibberellin 20 oxidase |
GRMZM2G026095 | Carboxylesterase family related to gibberellin receptor GID1L2 |
Sugar | |
AC211474.3_FG006 | GDP-fucose protein O-fucosyltransferase |
GRMZM2G018022 | UTP-glucose-1-phosphate uridylyltransferase |
GRMZM2G021243 | GDP-fucose protein O-fucosyltransferase |
GRMZM2G035749 | Glycosyl hydrolase family 14 |
GRMZM2G050273 | Raffinose synthase or seed inhibition protein Sip1 |
GRMZM2G074462 | Starch binding domain |
GRMZM2G082037 | UDP-glucoronosyl and UDP-glucosyl transferase related to Flavonol 3-O- glucosyltransferase |
GRMZM2G176630 | Galactosyltransferase |
GRMZM2G178278 | Galactosyltransferase |
GRMZM2G368827 | Sugar efflux transporter for intercellular exchange/MTN3 family protein |
Transporter | |
AC206030.4_FG001 | Drug transmembrane transporter |
GRMZM2G094490 | ABC-2 type transporter domain containing protein |
GRMZM2G361066 | ABC-2 type transporter |
Regulatory | |
GRMZM2G074373 | bZIP transcription factor |
GRMZM2G366434 | AP2-like ethylene-responsive transcription factor PLETHORA 2 |
GRMZM2G459540 | C2H2-like zinc finger protein |
GRMZM2G018631 | Zinc finger, C3HC4 type (RING finger) |
AC196161.3_FG002 | Transcription factor |
GRMZM2G356718 | Myb-like DNA-binding domain and Protein Phosphatase 2C |
GRMZM2G398758 | Myb-like DNA-binding domain |
GRMZM2G027253 | B3 DNA binding domain |
GRMZM2G109627 | No apical meristem (NAM) protein |
AC203972.3_FG001 | NB-ARC domain |
GRMZM2G088140 | G-box binding protein MFMR |
GRMZM2G063961 | Protein kinase domain |
GRMZM2G142390 | Protein kinase domain |
GRMZM2G166719 | Protein kinase domain |
GRMZM2G163297 | RNA recognition motif. |
GRMZM2G459746 | RNA recognition motif |
GRMZM2G005622 | F-box family protein |
AC209810.3_FG002 | Cysteine protease |
Ribosomal | |
GRMZM2G018403 | Ribosomal prokaryotic L21 protein |
GRMZM2G135095 | Ribosomal protein S18 |
GRMZM2G170420 | Ribosomal family S4e |
GRMZM5G861978 | Chloroplast 50S ribosomal protein L22 |
Chaperone | |
GRMZM2G005753 | DnaJ domain (Chaperone) |
GRMZM2G085934 | Hsp20/alpha crystallin family chaperone |
GRMZM2G434839 | DnaJ central domain (Chaperone) |
Cell trafficking | |
AC155377.1_FG001 | Myosin family protein |
GRMZM2G044348 | Signal peptide peptidase |
GRMZM2G047214 | Nuclear Pore Localization 4 (NPL4) family protein |
GRMZM2G077696 | Regulator of Vps4 ATPase activity in the MVB sorting pathway |
GRMZM2G095441 | Syntaxin |
GRMZM2G113319 | Myosin family protein |
GRMZM2G115775 | SNARE domain |
Cytochrome P450 oxidoreductase | |
GRMZM2G394783 | Oxidoreductase |
AC217947.4_FG002 | NADPH cytochrome P450 reductase |
GRMZM2G106650 | Cytochrome P450 |
GRMZM2G147245 | Cytochrome P450 related to cinnamate-4-hydroxylase |
GRMZM2G415579 | NAD(P)H-dependent oxidoreductase |
Heme | |
GRMZM2G025031 | Uroporphyrinogen decarboxylase (URO-D), 5th step in heme biosynthesis |
GRMZM2G071745 | Cytochrome b5-like Heme/Steroid binding domain |
GRMZM2G028986 | Cytochrome b5-like Heme/Steroid binding domain |
Cell wall or modification | |
GRMZM2G110145 | Cellulose synthase |
GRMZM2G113057 | Hydroxyproline-rich glycoprotein family protein |
GRMZM2G336879 | Pectinacetylesterase |
GRMZM2G352381 | Pectinacetylesterase |
Other | |
AC209810.3_FG002 | Cysteine protease |
GRMZM2G312061 | Cystatin domain and phloem filament protein PP1, proteinase inhibitor |
GRMZM2G325008 | Cystatin domain and phloem filament protein PP1, proteinase inhibitor |
GRMZM2G004188 | Nuclear excision repair XPG N-terminal domain |
GRMZM2G021277 | Pyridoxal-dependent decarboxylase conserved domain |
GRMZM2G027241 | Abscisic acid responsive TB2/DP1, HVA22 family |
GRMZM2G027851 | Sodium/hydrogen exchanger family |
GRMZM2G043749 | Uncharacterised protein family (UPF0041) |
GRMZM2G047412 | Chromosome segregation protein Spc25 |
GRMZM2G070279 | Short chain dehydrogenase |
GRMZM2G125448 | Transferase family |
GRMZM2G129979 | G10 protein |
GRMZM2G143703 | Hydrolase, alpha/beta fold family protein |
GRMZM2G146207 | Tetratricopeptide repeat containing protein |
GRMZM2G152370 | WD domain, G-beta repeat |
GRMZM2G168675 | Late embryogenesis abundant protein |
GRMZM2G176129 | NADH dehydrogenase transmembrane subunit |
GRMZM2G325575 | Ferritin-1, iron storage, chloroplastic precursor |
GRMZM2G348039 | Mitochondrial fission ELM1 |
GRMZM2G465046 | GDSL-like Lipase/Acylhydrolase |
GRMZM2G472236 | Seed maturation protein/LEA |
GRMZM5G838435 | Hydrolase, alpha/beta fold family domain |
GRMZM5G890241 | Leucine rich repeat containing protein |