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Table 1 List of AEE genes in 13 representative land plant genomes

From: Evolution of land plant genes encoding L-Ala-D/L-Glu epimerases (AEEs) via horizontal gene transfer and positive selection

Lineage

Species

Locusa

Length (aa)

Intron

Chr/scaffold

Location

EST hits

Dicot

Arabidopsis thaliana

AT3G18270

410

5

3

6261905 - 6264309

11

 

Populus trichocarpa

POPTR_0012s05040

421

6

scaffold_12

4532099 - 4536153

5

 

Glycine max

Glyma05g27030

443

6

5

32914724 - 32919062

19

 

Glycine max

Glyma08g10010

443

6

8

7188312 - 7191927

21

 

Prunus persica

ppa006194m

423

5

scaffold_5

17393161 - 17395652

1

 

Vitis vinifera

GSVIVG01008335001

401

6

17

3148656 - 3153072

4

 

Linum usitatissimum

Lus10020434

383

5

scaffold44

148949 - 150726

0

 

Linum usitatissimum

Lus10007062

408

5

scaffold772

42573 - 44511

0

Monocot

Sorghum bicolor

Sb03g006670

439

6

3

6866003 - 6869858

8

 

Setaria italica

Si001444m

447

4

scaffold_5

8094542 - 8098228

1

 

Oryza sativa

LOC_Os01g04630

446

6

1

2074753 - 2077903

19

 

Zea mays

GRMZM2G169152

552

6

3

19939526 - 19944315

22

 

Zea mays

GRMZM2G094273

440

6

8

13336541 - 13339982

1

 

Brachypodium distachyon

Bradi2g02560

442

6

2

1705605 - 1709251

2

Lycophyte

Selaginella moellendorffii

413825

378

5

scaffold_21

1839471 - 1840852

2

 

Selaginella moellendorffii

98948

374

4

scaffold_21

1851300 - 1852645

2

Bryophyta

Physcomitrella patens

Pp1s76_15V6

397

6

scaffold_76

98135 - 100510

8

  1. a The locus and the sequence information for each gene in this table were obtained from Phytozome v9.0 (http://www.phytozome.net/).