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Table 3 Differentially-expressed genes (FC ≥ 5) at EV in the comparisons PB vs C and V vs C

From: Selective defoliation affects plant growth, fruit transcriptional ripening program and flavonoid metabolism in grapevine

  EV    Trend in C
Gene ID FC PB/C FC V/C Gene description Functional category EV/BV
VIT_19s0014g02520 12.22 11.50 ribosomal protein S8, Chloroplast 30S photosynthesis
VIT_02s0012g01950 11.82 11.21 photosystem II protein D1 photosynthesis
VIT_08s0056g00590 11.37 8.92 chloroplast envelope membrane protein [Vitis vinifera] photosynthesis
VIT_07s0191g00130 10.78 9.22 histone H3.2 transcription
VIT_09s0002g08330 10.14 7.48 Photosystem I P700 apoprotein A2 photosynthesis
VIT_18s0001g08390 9.76 10.24 no hit  
VIT_08s0040g00640 9.40 5.64 no hit  
VIT_06s0009g02070 9.39 8.05 photosystem I assembly protein Ycf4 photosynthesis
VIT_09s0054g01450 9.21 8.50 no hit  
VIT_11s0016g02030 9.09 7.30 cytochrome f [Vitis vinifera] photosynthesis
VIT_13s0067g03310 9.02 7.25 ATP synthase CF1 alpha subunit photosynthesis
VIT_00s0246g00190 8.82 7.43 NADH-plastoquinone oxidoreductase subunit 4 [Vitis vinifera] photosynthesis
VIT_06s0009g02080 8.15 6.26 chloroplast envelope membrane protein photosynthesis
VIT_00s0246g00180 7.99 6.70 NADH-plastoquinone oxidoreductase subunit 4 [Vitis vinifera] photosynthesis
VIT_05s0077g00190 7.97 7.86 no hit  
VIT_16s0039g00380 7.56 6.55 ribosomal protein S14 30S translation
VIT_04s0044g02000 7.35 6.66 no hit  
VIT_18s0122g00440 7.30 7.95 no hit  
VIT_18s0001g14260 7.26 5.91 no hit  
VIT_19s0014g02410 7.18 8.17 L-ascorbate peroxidase 1, cytosolic (APX1) response to stress
VIT_12s0034g01910 7.14 6.67 Glutelin type-A 3 metabolic process  
VIT_10s0092g00760 7.12 6.19 Unknown protein  
VIT_19s0027g01950 7.11 5.48 CPL4 (C-TERMINAL DOMAIN PHOSPHATASE-LIKE 4) cellular process
VIT_12s0059g02430 7.06 5.73 chloroplast envelope membrane protein [Vitis vinifera] photosynthesis
VIT_09s0054g00320 7.03 5.66 mannosyl-oligosaccharide 1,2-alpha-mannosidase carbohydrate metabolism
VIT_00s0267g00060 7.03 7.28 no hit  
VIT_19s0093g00150 7.00 6.84 Glutathione S-transferase 25 GSTU25 response to stress
VIT_04s0043g00200 6.98 5.83 PROTEIN PHOSPHATASE 2A SUBUNIT A3 PP2AA3 protein metabolism
VIT_01s0010g02310 6.89 5.49 ribosomal protein L23 50S translation
VIT_00s0505g00050 6.82 4.34 no hit  
VIT_04s0079g00350 6.73 6.74 tubulin, Beta cellular process
VIT_11s0016g05680 6.70 7.39 RAB GTPase activator transport
VIT_12s0034g01890 6.69 6.63 Cupin region response to stress  
VIT_07s0005g03360 6.60 7.58 malate dehydrogenase, cytosolic carbohydrate metabolism
VIT_12s0034g01950 6.58 5.63 legumin carbohydrate metabolism  
VIT_00s1707g00010 6.41 5.76 ribosomal protein S8, Chloroplast 30S translation
VIT_04s0008g01550 6.38 6.88 small molecular heat shock protein 17.5 response to stress  
VIT_13s0019g01440 6.35 6.46 no hit  
VIT_14s0030g00830 6.32 6.79 Superoxide dismutase response to stress
VIT_15s0045g00050 6.29 5.78 protein phosphatase 2A 65 kDa regulatory subunit protein metabolism
VIT_09s0018g00820 6.23 5.93 photosystem I assembly protein Ycf3 photosynthesis
VIT_13s0047g00010 6.23 6.08 ZIFL2 (ZINC INDUCED FACILITATOR-LIKE 1) transport
VIT_11s0052g01680 6.16 5.71 photosystem II protein D1 photosynthesis
VIT_19s0015g02700 6.11 5.45 Glutathione S-transferase 25 GSTU25 response to stress
VIT_04s0044g01820 6.08 5.18 no hit  
VIT_13s0019g02760 6.02 6.28 heat shock protein 16.9 kDa class I response to stress  
VIT_13s0019g02770 5.97 6.52 heat shock protein 16.9 kDa class I response to stress  
VIT_17s0053g00010 5.94 2.92 no hit  
VIT_09s0002g00630 5.83 5.07 no hit   
VIT_07s0141g00130 5.64 5.14 protein phosphatase 2C protein metabolism
VIT_19s0014g02510 5.63 5.80 no hit  
VIT_06s0004g05680 5.58 6.06 Glutathione S-transferase 25 GSTU7 response to stress
VIT_00s0301g00040 5.46 5.92 glycine-rich protein metabolic process
VIT_19s0015g01300 5.43 4.14 amino acid permease 7 cellular amino acid metabolism
VIT_09s0070g00740 5.39 4.21 pfkB-type carbohydrate kinase biological process
VIT_19s0135g00190 5.37 5.12 CYP72A59 secondary metabolism
VIT_00s2608g00010 5.32 4.71 photosystem II PsbB photosynthesis
VIT_15s0024g01960 5.31 3.66 DNA-directed RNA polymerase subunit beta' transcription
VIT_00s0246g00200 5.29 3.87 Photosystem I iron-sulfur center (Photosystem I subunit VII) photosynthesis
VIT_02s0033g00410 5.26 4.75 myb VvMYBA1 secondary metabolism  
VIT_19s0093g00310 5.14 5.93 Glutathione S-transferase 8 GSTU19 response to stress
VIT_08s0040g01100 5.10 5.10 S-adenosylmethionine synthetase 1 (SAM1) hormone metabolism
VIT_14s0108g01640 5.03 3.01 NADH dehydrogenase ND2 carbohydrate metabolism
VIT_16s0050g01250 5.03 6.72 copper chaperone (CCH) transport
VIT_14s0060g01170 4.97 5.09 cytochrome c oxidase subunit Vc photosynthesis
VIT_13s0064g01420 4.91 5.32 succinate dehydrogenase [ubiquinone] flavoprotein subunit carbohydrate metabolism
VIT_19s0015g02890 4.90 5.78 Glutathione S-transferase 25 GSTU25 response to stress
VIT_18s0075g00560 4.88 5.11 fatty acid multifunctional protein (MFP2) metabolic process
VIT_15s0048g00140 4.77 5.11 H(+)-ATPASE AHA10 biological process
VIT_09s0002g03290 4.72 5.36 peroxiredoxin (alkyl hydroperoxide reductase subunit C) response to stress
VIT_19s0015g02940 4.63 5.13 CYP72A59 secondary metabolism
VIT_00s0246g00060 −5.00 −5.00 cytochrome c-type biogenesis protein CcmF transport
VIT_00s0246g00080 −8.08 −8.08 NADH dehydrogenase subunit 7 carbohydrate metabolism
VIT_10s0116g01110 −11.70 −11.70 no hit