Selective defoliation affects plant growth, fruit transcriptional ripening program and flavonoid metabolism in grapevine

Pastore, Chiara; Zenoni, Sara; Fasoli, Marianna; Pezzotti, Mario; Tornielli, Giovanni Battista; Filippetti, Ilaria

doi:10.1186/1471-2229-13-30

Table 3 Differentially-expressed genes (FC ≥ 5) at EV in the comparisons PB vs C and V vs C

From: Selective defoliation affects plant growth, fruit transcriptional ripening program and flavonoid metabolism in grapevine

	EV				Trend in C
Gene ID	FC PB/C	FC V/C	Gene description	Functional category	EV/BV
VIT_19s0014g02520	12.22	11.50	ribosomal protein S8, Chloroplast 30S	photosynthesis	↓
VIT_02s0012g01950	11.82	11.21	photosystem II protein D1	photosynthesis	↓
VIT_08s0056g00590	11.37	8.92	chloroplast envelope membrane protein [Vitis vinifera]	photosynthesis	↓
VIT_07s0191g00130	10.78	9.22	histone H3.2	transcription	↓
VIT_09s0002g08330	10.14	7.48	Photosystem I P700 apoprotein A2	photosynthesis	↓
VIT_18s0001g08390	9.76	10.24	no hit		↓
VIT_08s0040g00640	9.40	5.64	no hit		↓
VIT_06s0009g02070	9.39	8.05	photosystem I assembly protein Ycf4	photosynthesis	↓
VIT_09s0054g01450	9.21	8.50	no hit		↓
VIT_11s0016g02030	9.09	7.30	cytochrome f [Vitis vinifera]	photosynthesis	↓
VIT_13s0067g03310	9.02	7.25	ATP synthase CF1 alpha subunit	photosynthesis	↓
VIT_00s0246g00190	8.82	7.43	NADH-plastoquinone oxidoreductase subunit 4 [Vitis vinifera]	photosynthesis	↓
VIT_06s0009g02080	8.15	6.26	chloroplast envelope membrane protein	photosynthesis	↓
VIT_00s0246g00180	7.99	6.70	NADH-plastoquinone oxidoreductase subunit 4 [Vitis vinifera]	photosynthesis	↓
VIT_05s0077g00190	7.97	7.86	no hit		↓
VIT_16s0039g00380	7.56	6.55	ribosomal protein S14 30S	translation	↓
VIT_04s0044g02000	7.35	6.66	no hit		↓
VIT_18s0122g00440	7.30	7.95	no hit		↓
VIT_18s0001g14260	7.26	5.91	no hit		↓
VIT_19s0014g02410	7.18	8.17	L-ascorbate peroxidase 1, cytosolic (APX1)	response to stress	↓
VIT_12s0034g01910	7.14	6.67	Glutelin type-A 3	metabolic process
VIT_10s0092g00760	7.12	6.19	Unknown protein		↓
VIT_19s0027g01950	7.11	5.48	CPL4 (C-TERMINAL DOMAIN PHOSPHATASE-LIKE 4)	cellular process	↓
VIT_12s0059g02430	7.06	5.73	chloroplast envelope membrane protein [Vitis vinifera]	photosynthesis	↓
VIT_09s0054g00320	7.03	5.66	mannosyl-oligosaccharide 1,2-alpha-mannosidase	carbohydrate metabolism	↓
VIT_00s0267g00060	7.03	7.28	no hit		↓
VIT_19s0093g00150	7.00	6.84	Glutathione S-transferase 25 GSTU25	response to stress	↓
VIT_04s0043g00200	6.98	5.83	PROTEIN PHOSPHATASE 2A SUBUNIT A3 PP2AA3	protein metabolism	↓
VIT_01s0010g02310	6.89	5.49	ribosomal protein L23 50S	translation	↓
VIT_00s0505g00050	6.82	4.34	no hit		↓
VIT_04s0079g00350	6.73	6.74	tubulin, Beta	cellular process	↓
VIT_11s0016g05680	6.70	7.39	RAB GTPase activator	transport	↓
VIT_12s0034g01890	6.69	6.63	Cupin region	response to stress
VIT_07s0005g03360	6.60	7.58	malate dehydrogenase, cytosolic	carbohydrate metabolism	↓
VIT_12s0034g01950	6.58	5.63	legumin	carbohydrate metabolism
VIT_00s1707g00010	6.41	5.76	ribosomal protein S8, Chloroplast 30S	translation	↓
VIT_04s0008g01550	6.38	6.88	small molecular heat shock protein 17.5	response to stress
VIT_13s0019g01440	6.35	6.46	no hit		↓
VIT_14s0030g00830	6.32	6.79	Superoxide dismutase	response to stress	↓
VIT_15s0045g00050	6.29	5.78	protein phosphatase 2A 65 kDa regulatory subunit	protein metabolism	↓
VIT_09s0018g00820	6.23	5.93	photosystem I assembly protein Ycf3	photosynthesis	↓
VIT_13s0047g00010	6.23	6.08	ZIFL2 (ZINC INDUCED FACILITATOR-LIKE 1)	transport	↓
VIT_11s0052g01680	6.16	5.71	photosystem II protein D1	photosynthesis	↓
VIT_19s0015g02700	6.11	5.45	Glutathione S-transferase 25 GSTU25	response to stress	↓
VIT_04s0044g01820	6.08	5.18	no hit		↓
VIT_13s0019g02760	6.02	6.28	heat shock protein 16.9 kDa class I	response to stress
VIT_13s0019g02770	5.97	6.52	heat shock protein 16.9 kDa class I	response to stress
VIT_17s0053g00010	5.94	2.92	no hit		↓
VIT_09s0002g00630	5.83	5.07	no hit
VIT_07s0141g00130	5.64	5.14	protein phosphatase 2C	protein metabolism	↓
VIT_19s0014g02510	5.63	5.80	no hit		↓
VIT_06s0004g05680	5.58	6.06	Glutathione S-transferase 25 GSTU7	response to stress	↓
VIT_00s0301g00040	5.46	5.92	glycine-rich protein	metabolic process	↓
VIT_19s0015g01300	5.43	4.14	amino acid permease 7	cellular amino acid metabolism	↓
VIT_09s0070g00740	5.39	4.21	pfkB-type carbohydrate kinase	biological process	↓
VIT_19s0135g00190	5.37	5.12	CYP72A59	secondary metabolism	↓
VIT_00s2608g00010	5.32	4.71	photosystem II PsbB	photosynthesis	↓
VIT_15s0024g01960	5.31	3.66	DNA-directed RNA polymerase subunit beta'	transcription	↓
VIT_00s0246g00200	5.29	3.87	Photosystem I iron-sulfur center (Photosystem I subunit VII)	photosynthesis	↓
VIT_02s0033g00410	5.26	4.75	myb VvMYBA1	secondary metabolism
VIT_19s0093g00310	5.14	5.93	Glutathione S-transferase 8 GSTU19	response to stress	↓
VIT_08s0040g01100	5.10	5.10	S-adenosylmethionine synthetase 1 (SAM1)	hormone metabolism	↓
VIT_14s0108g01640	5.03	3.01	NADH dehydrogenase ND2	carbohydrate metabolism	↓
VIT_16s0050g01250	5.03	6.72	copper chaperone (CCH)	transport	↓
VIT_14s0060g01170	4.97	5.09	cytochrome c oxidase subunit Vc	photosynthesis	↓
VIT_13s0064g01420	4.91	5.32	succinate dehydrogenase [ubiquinone] flavoprotein subunit	carbohydrate metabolism	↓
VIT_19s0015g02890	4.90	5.78	Glutathione S-transferase 25 GSTU25	response to stress	↓
VIT_18s0075g00560	4.88	5.11	fatty acid multifunctional protein (MFP2)	metabolic process	↓
VIT_15s0048g00140	4.77	5.11	H(+)-ATPASE AHA10	biological process	↓
VIT_09s0002g03290	4.72	5.36	peroxiredoxin (alkyl hydroperoxide reductase subunit C)	response to stress	↓
VIT_19s0015g02940	4.63	5.13	CYP72A59	secondary metabolism	↓
VIT_00s0246g00060	−5.00	−5.00	cytochrome c-type biogenesis protein CcmF	transport	↑
VIT_00s0246g00080	−8.08	−8.08	NADH dehydrogenase subunit 7	carbohydrate metabolism	↑
VIT_10s0116g01110	−11.70	−11.70	no hit		↑

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