Differences in gene expression within a striking phenotypic mosaic Eucalyptustree that varies in susceptibility to herbivory

Padovan, Amanda; Keszei, Andras; Foley, William J; Külheim, Carsten

doi:10.1186/1471-2229-13-29

Table 4 Statistical analysis (Fisher’s exact test) of the over or under representation of GO categories in the overS (iii) data set derived from the transcriptome of leaves from susceptible branches of a mosaic Eucalyptus melliodora tree

From: Differences in gene expression within a striking phenotypic mosaic Eucalyptustree that varies in susceptibility to herbivory

GO Term	Name	Type	FDR	p-Value	Over/Under
GO:0010468	regulation of gene expression	P	0.01	0.00	+
GO:0019222	regulation of metabolic process	P	0.01	0.00	+
GO:0040029	regulation of gene expression, epigenetic	P	0.01	0.00	+
GO:0060255	regulation of macromolecule metabolic process	P	0.01	0.00	+
GO:0005840	ribosome	C	0.01	0.00	-
GO:0030529	ribonucleoprotein complex	C	0.01	0.00	-
GO:0005198	structural molecule activity	F	0.03	0.00	-
GO:0005488	binding	F	0.03	0.00	+
GO:0006139	nucleobase, nucleoside, nucleotide and nucleic acid metabolic process	P	0.04	0.00	+
GO:0006807	nitrogen compound metabolic process	P	0.04	0.00	+
GO:0034641	cellular nitrogen compound metabolic process	P	0.04	0.00	+
GO:0009719	response to endogenous stimulus	P	0.06	0.00	+
GO:0000166	nucleotide binding	F	0.07	0.00	+
GO:0043226	organelle	C	0.07	0.00	-
GO:0005622	intracellular	C	0.09	0.01	-
GO:0043229	intracellular organelle	C	0.09	0.01	-
GO:0044444	cytoplasmic part	C	0.10	0.01	-
GO:0006412	translation	P	0.10	0.01	-
GO:0009059	macromolecule biosynthetic process	P	0.10	0.01	-
GO:0034645	cellular macromolecule biosynthetic process	P	0.10	0.01	-
GO:0044249	cellular biosynthetic process	P	0.10	0.01	-
GO:0044424	intracellular part	C	0.12	0.01	-
GO:0005737	cytoplasm	C	0.13	0.01	-
GO:0044464	cell part	C	0.13	0.01	-
GO:0043412	macromolecule modification	P	0.15	0.02	+
GO:0016788	hydrolase activity, acting on ester bonds	F	0.15	0.02	+
GO:0016301	kinase activity	F	0.15	0.03	+
GO:0016772	transferase activity, transferring phosphorus-containing groups	F	0.15	0.03	+
GO:0003774	motor activity	F	0.15	0.03	+
GO:0016462	pyrophosphatase activity	F	0.15	0.03	+
GO:0016817	hydrolase activity, acting on acid anhydrides	F	0.15	0.03	+
GO:0016818	hydrolase activity, acting on acid anhydrides,	F	0.15	0.03	+
GO:0017111	nucleoside-triphosphatase activity	F	0.15	0.03	+
GO:0032501	multicellular organismal process	P	0.15	0.03	+
GO:0043227	membrane-bounded organelle	C	0.15	0.02	-
GO:0043231	intracellular membrane-bounded organelle	C	0.15	0.02	-
GO:0043228	non-membrane-bounded organelle	C	0.15	0.03	-
GO:0043232	intracellular non-membrane-bounded organelle	C	0.15	0.03	-
GO:0006464	protein modification process	P	0.19	0.03	+
GO:0007275	multicellular organismal development	P	0.20	0.04	+
GO:0004721	phosphoprotein phosphatase activity	F	0.20	0.04	+
GO:0016791	phosphatase activity	F	0.20	0.04	+
GO:0042578	phosphoric ester hydrolase activity	F	0.20	0.04	+
GO:0032991	macromolecular complex	C	0.20	0.04	-
GO:0050896	response to stimulus	P	0.21	0.04	+
GO:0032502	developmental process	P	0.21	0.05	+
GO:0009058	biosynthetic process	P	0.21	0.04	-

Type refers to the GO category type: F = molecular function, P = biological processes and C = cellular component. FDR refers to the false discovery rate (FDR)- corrected p-value and the thick horizontal line shows a significance level of 0.05 FDR. p-Value refers to single test p-value. In the over/under column, + signifies over-represented categories and – signifies under-represented categories when compared to the reference data set (i).

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ISSN: 1471-2229

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