BMC Plant Biology

Table 1 Sequencing statistics generated by de novo assembly for the reads generated by sequencing the mRNA pool of leaves from the resistant and susceptible branches of a mosaic Eucalyptus melliodora

From: Differences in gene expression within a striking phenotypic mosaic Eucalyptustree that varies in susceptibility to herbivory

		Counts	Mean length	Total bases
*de novo* assembly (i)	total reads	277 725	296	82 179 685
	mapped reads	243 470	290	70 654 843
	unmapped reads	34 255	336	11 524 842
	contigs	13 104	599	7 853 262
R mapped to *de novo* (ii)	total reads	133 574	320	42 788 130
	mapped reads	114 093	316	36 061 899
	unmapped reads	19 481	345	6 726 231
	contigs	11 965	615	7 367 368
S mapped to *de novo* (iii)	total reads	144 151	273	39 391 555
	mapped reads	130 008	267	34 767 476
	unmapped reads	14 143	327	4 624 079
	contigs	10 130	626	6 350 291

(i) contains all reads from this library, (ii) contains all reads over-represented in the resistant branch compared with the susceptible branch and (iii) contains all reads over-represented in the susceptible branch compared with the resistant branch.

Back to article page

ISSN: 1471-2229

Contact us

General enquiries: journalsubmissions@springernature.com