Table 2 Distribution of dehydration stress responding genes according to GO function
From: Four distinct types of dehydration stress memory genes in Arabidopsis thaliana
| Â | [+/+] | [-/-] | [+/-] | [-/+] | [+/=] | [-/=] | [=/+] | [=/-] | |
|---|---|---|---|---|---|---|---|---|---|
362 | 310 | 857 | 434 | 2177 | 2439 | 798 | 573 | ||
Ribosomal and protein synthesis | 1 | 31(10%) | 1 | 0 | 10 (0.5%) | 135 (5%) | 2 | 26 (5%) | |
Response to salt | 25 (7%) | 8 (3%) | 84 (10%) | 14 (3%) | 154 (7%) | 55 (2%) | 35 (4%) | 24 (4%) | |
Response to cold/heat | 28 (8%) | 18 (8%) | 53 (6%) | 19 (4%) | 147 (7%) | 72 (3%) | 40 (5%) | 46 (7%) | |
Response to ABA | 24 (7%) | 6 (2%) | 80 (9%) | 12 (1%) | 143 (7%) | 38 (1%) | 39 (5%) | 24 (4%) | |
LEA | 12 (3%) | 0 | 4 | 2 | 9 | 2 | 5 (0.7%) | 0 | |
Response to light | 18 (5%) | 25 (8%) | 28 (3%) | 24(6%) | 68 (3%) | 101 (4%) | 47 (6%) | 27 (5%) | |
| Â | UV | 3 | 2 | 4 | 5 | 10 | 18 | 12 | 6 |
| Â | Intensity | 11 | 10 | 13 | 11 | 40 | 66 | 27 | 14 |
| Â | Red/far red | 2 | 12 | 7 | 3 | 14 | 16 | 6 | 7 |
| Â | Blue | 2 | 1 | 3 | 5 | 2 | 10 | 2 | 0 |
Circadian rhythm | 1 | 1 | 13 | 6 | 11 | 23 | 8 | 12 | |
Chloroplast | 12 (3%) | 75 (24%) | 20 (2%) | 22 (5%) | 48 (2%) | 203 (8%) | 26 (3%) | 75 (15%) | |
Thylakoid membrane | 0 | 53 (17%) | 6 (0.7%) | 9 (2%) | 14 | 177 (7%) | 7 (1%) | 22 (4%) | |
Membrane | 30 (8%) | 23 (7%) | 106 (12%) | 41 (10%) | 312 (14%) | 233 (10%) | 73 (9%) | 71 (14%) | |
TM transport, porins | 20 (5%) | 6 (2%) | 62 (7%) | 26 (5%) | 138 (7%) | 95 (4%) | 50 (6%) | 24 (4%) | |
Wall/PM | 13 (3%) | 25 (8%) | 30 (3%) | 22 (5%) | 48 (2%) | 129 (5%) | 38 (4%) | 37 (6%) | |
Kinases, recepors, signal trans-duction | 4 | 16 (5%) | 52 (6%) | 31 (7%) | 107 (5%) | 111 (5%) | 25 (3%) | 21 (4%) | |
Response to auxin | 9 (2%) | 5 (2%) | 43 (4%) | 10 (1%) | 66 (3%) | 48 (2%) | 12 (1%) | 12 (2%) | |
Response to ethylene | 4 (1%) | 3 (1%) | 53 (6%) | 8 (2%) | 87 (4%) | 24 (1%) | 12 (%) | 8 (1%) | |
Response to GA | 2 (1%) | 5 (2%) | 10 (1%) | 7 (1%) | 13 | 18 (0.7%) | 13 (1%) | 5 (1%) | |
Response to JA | 7 (2%) | 16 (5%) | 121 (14%) | 19 (2%) | 89 (4%) | 46 (2%) | 13 (1%) | 21 (4%) | |
Response to SA | 4 (1%) | 5 (2%) | 41 (5%) | 13 (3%) | 63 (3%) | 24 (1%) | 14 (1%) | 12 (2%) | |
Transcription factors | 29 (8%) | 6 (2%) | 73 (7%) | 25 (6%) | 161 (7%) | 100 (4%) | 51(2%) | 22 (4%) | |
| Â | AP2/ERF | 5 | 1 | 16 | 2 | 19 | 10 | 1 | 3 |
| Â | bHLH | 2 | 1 | 16 | 2 | 11 | 16 | 5 | 0 |
| Â | homeo_ZIP | 3 | 1 | 6 | 3 | 25 | 16 | 8 | 3 |
| Â | MYB | 4 | 1 | 8 | 3 | 16 | 9 | 10 | 4 |
| Â | ZF | 3 | 2 | 6 | 11 | 41 | 28 | 12 | 4 |
| Â | B_ZIP | 4 | 0 | 4 | 2 | 13 | 1 | 3 | 0 |
| Â | NAC | 1 | 0 | 7 | 1 | 13 | 1 | 3 | 0 |
| Â | GRAS | 1 | 0 | 2 | 0 | 3 | 6 | 1 | 2 |
| Â | HSF | 1 | 0 | 3 | 0 | 4 | 0 | 2 | 1 |
| Â | CCAAT | 3 | 0 | 0 | 0 | 2 | 3 | 2 | 0 |
| Â | WRKY | 2 | 0 | 5 | 1 | 14 | 4 | 1 | 1 |