Table 2 Basic assembly statistics for the Pelargonium x hortorum transcriptome
From: Comparative analyses of two Geraniaceae transcriptomes using next-generation sequencing
| Â | Newbler | MIRA | SOAPdenovo | Trinity | SOAPtrans |
|---|---|---|---|---|---|
Number of nonredundant contigs | 28,182 | 30,947 | 67,028 | 67,614 | 62,470 |
Total bases | 12,972,883 | 15,326,277 | 39,088,184 | 58,210,111 | 33,057,051 |
Max contig length | 8,147 | 12,431 | 6,616 | 16,017 | 7,574 |
Mean contig length | 460 | 495 | 583 | 860 | 529 |
N50 | 478 | 525 | 782 | 1,319 | 678 |