Table 9 Observed maize line genotypes, allele frequencies and estimated average effects of combined markers of lcyE and crtRB1 on carotenoid content of 130 yellow maize inbred lines
|  | lcyE + crtRB1 | N | Carotenoids ± SE | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Serial. no. | 5′TE | SNP (216) | 3′ InDel | 5′TE | Indel4 | 3′TE | βcar | PVA | tcar | lnβbr/αbr | lnβcar/βcry | lnβcar/zeax | lnβcar/all | |
1 |  0’ | G | 8 | 2 | 0 | 1 | 2 | 15.28 ± 0.75 | 16.18 ± 0.95 | 19.83 ± 2.86 | 2.11 ± 0.3 | 3.46 ± 0.26 | 2.39 ± 0.39 | 1.52 ± 0.35 |
2 |  0’ | G | 8 | 2 | 0 | 1|3 | 1 | 14.78 ± 1.03 | 15.42 ± 1.28 | 19.15 ± 3.99 | 2.15 ± 0.4 | 3.88 ± 0.36 | 2.02 ± 0.52 | 1.25 ± 0.48 |
3 | 3 | T | 0 | 2 | 12|0 | 1|3 | 1 | 13.65 ± 1.03 | 14.31 ± 1.28 | 18.24 ± 3.99 | 2.03 ± 0.4 | 4.34 ± 0.36 | 2.39 ± 0.52 | 1.56 ± 0.48 |
4 | 3 | T | 8 | 2 | 0 | 1 | 1 | 12.26 ± 1.03 | 13.16 ± 1.28 | 20.09 ± 3.99 | 1.69 ± 0.39 | 3.08 ± 0.36 | 1.27 ± 0.52 | 0.52 ± 0.48 |
5 | 3 | T | 8|0 | 2 | 0 | 1 | 2 | 11.75 ± 0.75 | 12.06 ± 0.95 | 17.82 ± 2.86 | 1.26 ± 0.3 | 3.74 ± 0.26 | 2.38 ± 0.39 | 0.96 ± 0.35 |
6 |  0’ | G | 8 | 2 | 12 | 1 | 4 | 10.55 ± 0.57 | 11.6 ± 0.72 | 22.38 ± 2.08 | 0.88 ± 0.24 | 2.64 ± 0.19 | 1.49 ± 0.31 | 0.03 ± 0.26 |
7 | 1 | G | 0 | 2 | 0 | 1 | 1 | 9.23 ± 1.03 | 9.85 ± 1.28 | 11.75 ± 3.99 | 2.05 ± 0.39 | 3.23 ± 0.36 | 1.77 ± 0.52 | 1.05 ± 0.48 |
8 |  0’ | G | 8|0 | 2 | 12 | 1 | 1 | 9.05 ± 1.03 | 9.61 ± 1.28 | 13.29 ± 3.99 | 1.28 ± 0.4 | 3.63 ± 0.36 | 2.53 ± 0.52 | 0.92 ± 0.48 |
9 | 3 | T | 0 | 2 | 0 | 1 | 4 | 8.98 ± 0.57 | 9.91 ± 0.72 | 22.56 ± 2.09 | 0.38 ± 0.24 | 2.48 ± 0.19 | 1.2 ± 0.31 | -0.38 ± 0.26 |
10 |  0’ | G | 8 | 2 | 12 | 3 | 1 | 8.69 ± 1.03 | 9.53 ± 1.28 | 21.20 ± 3.99 | 0.75 ± 0.4 | 2.47 ± 0.36 | 0.52 ± 0.52 | -0.49 ± 0.48 |
11 | 3 | T | 8|0 | 1 | 0 | 3 | 1 | 7.56 ± 1.03 | 12.09 ± 1.28 | 43.36 ± 3.99 | 1.72 ± 0.39 | -0.11 ± 0.36 | -0.9 ± 0.52 | -1.51 ± 0.48 |
12 | 3 | T | 8|0 | 2 | 0 | 1|3 | 1 | 7.11 ± 1.03 | 8.31 ± 1.28 | 28.58 ± 3.99 | 0.08 ± 0.4 | 1.53 ± 0.36 | 0.17 ± 0.52 | -1.12 ± 0.48 |
13 | 1|3 | T | 0 | 2 | 0 | 1 | 1 | 6.63 ± 1.03 | 7.10 ± 1.28 | 13.09 ± 3.99 | 0.77 ± 0.4 | 2.58 ± 0.36 | 1.51 ± 0.52 | 0.05 ± 0.48 |
14 |  0’ | G | 8 | 1 | 0 | 1|3 | 1 | 6.47 ± 1.03 | 7.90 ± 1.28 | 23.05 ± 3.99 | 2.94 ± 0.39 | 0.55 ± 0.36 | -0.73 ± 0.52 | -0.95 ± 0.48 |
15 | 1 | G | 0 | 1 | 0 | 1|3 | 1 | 6.33 ± 1.03 | 8.00 ± 10.28 | 22.46 ± 3.99 | 1.60 ± 0.4 | 0.92 ± 0.36 | -0.47 ± 0.52 | -0.98 ± 0.48 |
16 | 3 | T | 0 | 1 | 0 | 3 | 1 | 6.09 ± 1.03 | 9.38 ± 1.28 | 34.21 ± 3.99 | 1.38 ± 0.4 | 0.04 ± 0.36 | -0.75 ± 0.52 | -1.47 ± 0.48 |
17 |  0’ | T | 8 | 2 | 0 | 1 | 1 | 6.01 ± 1.03 | 7.04 ± 1.28 | 10.35 ± 3.99 | 1.66 ± 0.4 | 1.59 ± 0.36 | 1.57 ± 0.52 | 0.37 ± 0.48 |
18 |  0’ | G | 8 | 1 | 12 | 3 | 6 | 3.96 ± 0.5 | 5.80 ± 0.63 | 27.06 ± 1.75 | 1.62 ± 0.22 | 0.49 ± 0.16 | -0.77 ± 0.28 | -1.19 ± 0.22 |
19 | 1 | G | 0 | 1 | 0 | 3 | 2 | 3.83 ± 0.75 | 5.52 ± 0.95 | 16.87 ± 2.86 | 1.39 ± 0.3 | 0.21 ± 0.26 | -0.45 ± 0.39 | -1.29 ± 0.35 |
20 | 1|3 | T | 0 | 1 | 12 | 3 | 1 | 3.49 ± 1.03 | 6.12 ± 1.28 | 31.77 ± 3.99 | 1.39 ± 0.4 | -0.36 ± 0.36 | -1.59 ± 0.52 | -2.07 ± 0.48 |
21 | 3 | T | 0 | 1 | 0 | 3 | 6 | 3.14 ± 0.5 | 4.83 ± 0.63 | 27.80 ± 1.76 | 1.01 ± 0.22 | 0.38 ± 0.16 | -1.45 ± 0.28 | -2.12 ± 0.22 |
22 |  0’ | T | 0 | 1 | 0 | 3 | 1 | 3.14 ± 1.03 | 5.07 ± 1.28 | 28.38 ± 3.99 | 1.21 ± 0.4 | -0.1 ± 0.36 | -1.61 ± 0.52 | -2.12 ± 0.48 |
23 |  0’ | G | 8 | 1 | 0 | 3 | 58 | 2.99 ± 0.32 | 4.83 ± 0.42 | 19.91 ± 0.89 | 1.93 ± 0.17 | -0.14 ± 0.08 | -1.21 ± 0.21 | -1.78 ± 0.13 |
24 |  0’ | G | 8|0 | 1 | 0 | 1|3 | 1 | 2.85 ± 1.03 | 3.99 ± 1.28 | 6.41 ± 3.99 | 1.87 ± 0.4 | 0.42 ± 0.36 | 1.24 ± 0.52 | -0.22 ± 0.48 |
25 |  0’ | G | 0 | 1 | 0 | 3 | 9 | 2.84 ± 0.44 | 4.64 ± 0.56 | 24.59 ± 1.49 | 1.46 ± 0.2 | -0.1 ± 0.14 | -1.39 ± 0.26 | -2.1 ± 0.19 |
26 | 1 | G | 0 | 1 | 12 | 3 | 7 | 2.70 ± 0.47 | 4.97 ± 0.6 | 21.46 ± 1.66 | 1.85 ± 0.21 | -0.45 ± 0.15 | -1.39 ± 0.27 | -1.94 ± 0.21 |
27 |  0’ | G | 8 | NA | 0 | 3 | 1 | 2.54 ± 1.03 | 4.25 ± 1.28 | 22.04 ± 3.99 | 1.66 ± 0.4 | -0.21 ± 0.36 | -1.54 ± 0.52 | -2.04 ± 0.48 |
28 | 3 | G | 0 | 1 | 0 | 3 | 1 | 2.45 ± 1.03 | 4.02 ± 1.28 | 26.78 ± 3.99 | 0.28 ± 0.4 | -0.06 ± 0.36 | -1.37 ± 0.52 | -2.4 ± 0.48 |
29 | 1 | G | 8 | 1 | 0 | 3 | 2 | 1.97 ± 0.76 | 3.17 ± 0.95 | 8.31 ± 2.88 | 1.44 ± 0.3 | -0.13 ± 0.26 | 0.04 ± 0.39 | -1.12 ± 0.35 |
30 |  0’ | G | 8|0 | 1 | 0 | 3 | 4 | 1.84 ± 0.57 | 3.32 ± 0.72 | 15.86 ± 2.09 | 1.34 ± 0.24 | -0.47 ± 0.19 | -1.54 ± 0.31 | -2.23 ± 0.26 |
31 | NA | G | 0 | NA | 0 | 3 | 1 | 1.82 ± 1.03 | 3.75 ± 1.28 | 22.50 ± 3.99 | 0.68 ± 0.4 | -0.67 ± 0.36 | -1.68 ± 0.52 | -2.43 ± 0.48 |
32 |  0’ | T | 8 | 1 | 12 | 3 | 1 | 1.72 ± 1.03 | 3.62 ± 1.28 | 15.98 ± 3.99 | 1.04 ± 0.39 | -0.72 ± 0.36 | -1.09 ± 0.52 | -2.07 ± 0.48 |
33 | 3 | G | 8 | 1|2 | 0 | 3 | 1 | 1.05 ± 1.03 | 1.65 ± 1.28 | 13.43 ± 3.99 | 1.74 ± 0.4 | 0.03 ± 0.36 | -2.12 ± 0.52 | -2.42 ± 0.48 |
34 |  0’ | G | 0 | 1 | 12 | 3 | 3 | 0.93 ± 0.64 | 1.71 ± 0.80 | 10.18 ± 2.37 | 1.56 ± 0.26 | -0.42 ± 0.22 | -1.34 ± 0.34 | -1.45 ± 0.29 |