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Table 9 Observed maize line genotypes, allele frequencies and estimated average effects of combined markers of lcyE and crtRB1 on carotenoid content of 130 yellow maize inbred lines

From: Marker-trait association analysis of functional gene markers for provitamin A levels across diverse tropical yellow maize inbred lines

  lcyE + crtRB1 N Carotenoids ± SE
Serial. no. 5′TE SNP (216) 3′ InDel 5′TE Indel4 3′TE βcar PVA tcar lnβbr/αbr lnβcar/βcry lnβcar/zeax lnβcar/all
1  0’ G 8 2 0 1 2 15.28 ± 0.75 16.18 ± 0.95 19.83 ± 2.86 2.11 ± 0.3 3.46 ± 0.26 2.39 ± 0.39 1.52 ± 0.35
2  0’ G 8 2 0 1|3 1 14.78 ± 1.03 15.42 ± 1.28 19.15 ± 3.99 2.15 ± 0.4 3.88 ± 0.36 2.02 ± 0.52 1.25 ± 0.48
3 3 T 0 2 12|0 1|3 1 13.65 ± 1.03 14.31 ± 1.28 18.24 ± 3.99 2.03 ± 0.4 4.34 ± 0.36 2.39 ± 0.52 1.56 ± 0.48
4 3 T 8 2 0 1 1 12.26 ± 1.03 13.16 ± 1.28 20.09 ± 3.99 1.69 ± 0.39 3.08 ± 0.36 1.27 ± 0.52 0.52 ± 0.48
5 3 T 8|0 2 0 1 2 11.75 ± 0.75 12.06 ± 0.95 17.82 ± 2.86 1.26 ± 0.3 3.74 ± 0.26 2.38 ± 0.39 0.96 ± 0.35
6  0’ G 8 2 12 1 4 10.55 ± 0.57 11.6 ± 0.72 22.38 ± 2.08 0.88 ± 0.24 2.64 ± 0.19 1.49 ± 0.31 0.03 ± 0.26
7 1 G 0 2 0 1 1 9.23 ± 1.03 9.85 ± 1.28 11.75 ± 3.99 2.05 ± 0.39 3.23 ± 0.36 1.77 ± 0.52 1.05 ± 0.48
8  0’ G 8|0 2 12 1 1 9.05 ± 1.03 9.61 ± 1.28 13.29 ± 3.99 1.28 ± 0.4 3.63 ± 0.36 2.53 ± 0.52 0.92 ± 0.48
9 3 T 0 2 0 1 4 8.98 ± 0.57 9.91 ± 0.72 22.56 ± 2.09 0.38 ± 0.24 2.48 ± 0.19 1.2 ± 0.31 -0.38 ± 0.26
10  0’ G 8 2 12 3 1 8.69 ± 1.03 9.53 ± 1.28 21.20 ± 3.99 0.75 ± 0.4 2.47 ± 0.36 0.52 ± 0.52 -0.49 ± 0.48
11 3 T 8|0 1 0 3 1 7.56 ± 1.03 12.09 ± 1.28 43.36 ± 3.99 1.72 ± 0.39 -0.11 ± 0.36 -0.9 ± 0.52 -1.51 ± 0.48
12 3 T 8|0 2 0 1|3 1 7.11 ± 1.03 8.31 ± 1.28 28.58 ± 3.99 0.08 ± 0.4 1.53 ± 0.36 0.17 ± 0.52 -1.12 ± 0.48
13 1|3 T 0 2 0 1 1 6.63 ± 1.03 7.10 ± 1.28 13.09 ± 3.99 0.77 ± 0.4 2.58 ± 0.36 1.51 ± 0.52 0.05 ± 0.48
14  0’ G 8 1 0 1|3 1 6.47 ± 1.03 7.90 ± 1.28 23.05 ± 3.99 2.94 ± 0.39 0.55 ± 0.36 -0.73 ± 0.52 -0.95 ± 0.48
15 1 G 0 1 0 1|3 1 6.33 ± 1.03 8.00 ± 10.28 22.46 ± 3.99 1.60 ± 0.4 0.92 ± 0.36 -0.47 ± 0.52 -0.98 ± 0.48
16 3 T 0 1 0 3 1 6.09 ± 1.03 9.38 ± 1.28 34.21 ± 3.99 1.38 ± 0.4 0.04 ± 0.36 -0.75 ± 0.52 -1.47 ± 0.48
17  0’ T 8 2 0 1 1 6.01 ± 1.03 7.04 ± 1.28 10.35 ± 3.99 1.66 ± 0.4 1.59 ± 0.36 1.57 ± 0.52 0.37 ± 0.48
18  0’ G 8 1 12 3 6 3.96 ± 0.5 5.80 ± 0.63 27.06 ± 1.75 1.62 ± 0.22 0.49 ± 0.16 -0.77 ± 0.28 -1.19 ± 0.22
19 1 G 0 1 0 3 2 3.83 ± 0.75 5.52 ± 0.95 16.87 ± 2.86 1.39 ± 0.3 0.21 ± 0.26 -0.45 ± 0.39 -1.29 ± 0.35
20 1|3 T 0 1 12 3 1 3.49 ± 1.03 6.12 ± 1.28 31.77 ± 3.99 1.39 ± 0.4 -0.36 ± 0.36 -1.59 ± 0.52 -2.07 ± 0.48
21 3 T 0 1 0 3 6 3.14 ± 0.5 4.83 ± 0.63 27.80 ± 1.76 1.01 ± 0.22 0.38 ± 0.16 -1.45 ± 0.28 -2.12 ± 0.22
22  0’ T 0 1 0 3 1 3.14 ± 1.03 5.07 ± 1.28 28.38 ± 3.99 1.21 ± 0.4 -0.1 ± 0.36 -1.61 ± 0.52 -2.12 ± 0.48
23  0’ G 8 1 0 3 58 2.99 ± 0.32 4.83 ± 0.42 19.91 ± 0.89 1.93 ± 0.17 -0.14 ± 0.08 -1.21 ± 0.21 -1.78 ± 0.13
24  0’ G 8|0 1 0 1|3 1 2.85 ± 1.03 3.99 ± 1.28 6.41 ± 3.99 1.87 ± 0.4 0.42 ± 0.36 1.24 ± 0.52 -0.22 ± 0.48
25  0’ G 0 1 0 3 9 2.84 ± 0.44 4.64 ± 0.56 24.59 ± 1.49 1.46 ± 0.2 -0.1 ± 0.14 -1.39 ± 0.26 -2.1 ± 0.19
26 1 G 0 1 12 3 7 2.70 ± 0.47 4.97 ± 0.6 21.46 ± 1.66 1.85 ± 0.21 -0.45 ± 0.15 -1.39 ± 0.27 -1.94 ± 0.21
27  0’ G 8 NA 0 3 1 2.54 ± 1.03 4.25 ± 1.28 22.04 ± 3.99 1.66 ± 0.4 -0.21 ± 0.36 -1.54 ± 0.52 -2.04 ± 0.48
28 3 G 0 1 0 3 1 2.45 ± 1.03 4.02 ± 1.28 26.78 ± 3.99 0.28 ± 0.4 -0.06 ± 0.36 -1.37 ± 0.52 -2.4 ± 0.48
29 1 G 8 1 0 3 2 1.97 ± 0.76 3.17 ± 0.95 8.31 ± 2.88 1.44 ± 0.3 -0.13 ± 0.26 0.04 ± 0.39 -1.12 ± 0.35
30  0’ G 8|0 1 0 3 4 1.84 ± 0.57 3.32 ± 0.72 15.86 ± 2.09 1.34 ± 0.24 -0.47 ± 0.19 -1.54 ± 0.31 -2.23 ± 0.26
31 NA G 0 NA 0 3 1 1.82 ± 1.03 3.75 ± 1.28 22.50 ± 3.99 0.68 ± 0.4 -0.67 ± 0.36 -1.68 ± 0.52 -2.43 ± 0.48
32  0’ T 8 1 12 3 1 1.72 ± 1.03 3.62 ± 1.28 15.98 ± 3.99 1.04 ± 0.39 -0.72 ± 0.36 -1.09 ± 0.52 -2.07 ± 0.48
33 3 G 8 1|2 0 3 1 1.05 ± 1.03 1.65 ± 1.28 13.43 ± 3.99 1.74 ± 0.4 0.03 ± 0.36 -2.12 ± 0.52 -2.42 ± 0.48
34  0’ G 0 1 12 3 3 0.93 ± 0.64 1.71 ± 0.80 10.18 ± 2.37 1.56 ± 0.26 -0.42 ± 0.22 -1.34 ± 0.34 -1.45 ± 0.29
  1. N = number of inbred lines, NA = Not available (missing marker score). SE = Standard error of least square means. Symbol  |’ separates heterozygous alleles of a locus. SNP (216) is a dominant marker for the  T’ allele, thus  T’ can be  TT’ or  TG’.