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Table 1 The common functions of monoallelic expression and preferential allelic expression genes in the three rice hybrids

From: Global RNA sequencing reveals that genotype-dependent allele-specific expression contributes to differential expression in rice F1 hybrids

 

GO Term

GL × TQ

GL × 93-11

93-11 × TQ

Genes

P value

Genes

P value

Genes

P value

Molecular function

      

Monoallelic expression genes

Nucleotide binding

26

1.87E-08

27

2.20E-10

37

1.52E-14

Receptor activity

8

3.77E-05

12

1.23E-09

7

5.85E-04

Protein binding

25

5.51E-10

41

1.70E-26

46

1.98E-26

Kinase activity

22

5.65E-09

22

4.85E-10

28

3.30E-12

Preferential allelic expression genes

Nucleotide binding

252

4.38E-48

300

1.27E-66

220

3.26E-30

Receptor activity

59

3.55E-18

77

2.05E-28

25

0.02

Protein binding

231

1.09E-55

276

4.19E-76

185

3.07E-29

Kinase activity

180

7.10E-37

235

1.27E-62

142

8.13E-18

Transcription factor activity

163

1.20E-27

127

3.67E-11

158

2.33E-23

Structural molecule activity

63

4.19E-11

89

2.71E-22

59

1.02E-08

Transporter activity

112

2.22E-14

105

5.37E-10

119

1.25E-15

Carbohydrate binding

7

0.03

9

0

8

0.01

 

Biological function

      

Monoallelic expression genes

Protein modification

27

3.10E-11

27

1.35E-12

36

9.22E-17

Signal transduction

31

3.16E-13

27

1.48E-11

43

2.53E-21

Response to endogenous stimulus

28

8.58E-10

24

2.49E-08

40

6.32E-17

Preferential allelic expression genes

Protein modification

221

2.89E-48

235

4.77E-50

175

8.30E-24

Signal transduction

238

6.76E-50

266

1.24E-58

182

1.07E-21

Biosynthesis

125

3.00E-10

147

1.38E-14

90

0.023505

Morphogenesis

32

2.70E-10

39

7.50E-14

23

4.21E-05

Response to endogenous stimulus

264

1.63E-54

265

1.75E-48

207

3.00E-25

DNA metabolism

49

4.49E-05

42

0.010399

46

7.96E-04

Protein biosynthesis

40

2.48E-06

51

5.48E-10

45

8.44E-08

Amino acid and derivative metabolism

86

6.11E-15

79

2.05E-10

61

3.23E-05

Lipid metabolism

67

7.99E-11

63

5.17E-08

45

0.003092

Response to stress

172

2.38E-24

165

2.76E-18

204

5.86E-36

Catabolism

76

1.96E-19

43

3.72E-04

58

1.06E-09

Response to external stimulus

58

5.92E-11

56

6.79E-09

62

5.63E-12

Response to biotic stimulus

107

1.36E-13

143

4.41E-26

149

2.22E-30

Response to abiotic stimulus

141

9.70E-23

140

2.49E-19

146

4.98E-23

Pollination

10

0.001166

20

2.35E-10

11

4.48E-04

Flower development

30

3.36E-06

44

1.54E-12

42

8.04E-12

Cell organization and biogenesis

39

1.81E-04

33

0.019878

31

0.033566

Cell differentiation

44

2.43E-11

51

4.52E-14

36

6.69E-07

Secretory pathway

81

0.003356

93

2.74E-04

90

3.59E-04

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BMC Plant Biology

ISSN: 1471-2229

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