Table 3 Candidate genes significantly regulated within the RNA-Seq experiment (FDR < 0.05) and validated by RT-PCR
Gene | Position | Function1 | Accession2 | Comp. 1 | Comp. 2 | Comp. 3 | Comp. 4 |
|---|---|---|---|---|---|---|---|
(log2FC) | (log2FC) | (log2FC) | (log2FC)3 | ||||
GRMZM2G350312 | 1:65657063-65660290 | bHLH transcription factor | AT3G47640.1(PYE)/LOC_Os03g26210.2/B8A2P8 | sig. (1.81) | Â | Â | sig. (3.07) |
GRMZM2G106980 | 1:203647045-203653762 | Putative BURP-domain protein, uncharacterized protein | AT5G25610.1(ATRD22,RD22)/LOC_Os06g19800.1/B8A121 | sig. (-3.80) | sig. (-4.25) | Â | Â |
GRMZM2G059465 | 1:209119390-209120903 | O-methyl transferase, uncharacterized protein | AT4G35160.1/LOC_Os06g16960.1/B8A095 | Â | Â | Â | sig. (-2.49) |
GRMZM2G055802 | 1:293997055-290998873 | NA | LOC_Os03g60840.1 | Â | Â | sig. (2.53) | Â |
GRMZM2G132678 | 3:20795800-20806607 | Hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase | AT5G48930.1(HCT)/LOC_Os08g43040.1 | sig. (5.35) | sig. (4.50) | Â | Â |
GRMZM2G057413 | 3:148031451-148062994 | bHLH transcription factor | AT3G56970.1(BHLH038,ORG2)/LOC_Os01g72370.1 | Â | Â | Â | sig. (3.77) |
GRMZM2G400602 | 3:174361241-174363882 | Putative oligopeptide transporter, uncharacterized protein | AT1G22540.1/LOC_Os01g65100.1/C0HEP6 | Â | Â | Â | sig. (3.29) |
GRMZM5G896496 | 3:211872426-211879044 | Putative chaperone ClpC1, uncharacterized protein | C0HH28 | sig. (-5.10) | sig. (-5.00) | Â | Â |
GRMZM2G574782 | 4:18676198-18682894 | Probable bifunctional methylribose-1-phosphate dehydratase/enolase phosphatase E1 | AT5G53850.2/LOC_Os11g29370.1/B4G0F3 | sig. (1.74) | Â | Â | sig. (1.92) |
GRMZM2G096958 | 4:219581607-219585123 | Nicotinamine aminotransferase1, uncharacterized protein | AT5G36160.1/LOC_Os02g20360.1/B4FEZ7 | sig. (1.71) | Â | Â | sig. (1.98) |
GRMZM2G010280 | 4:240232549-240234575 | High affinity nitrate transporter | AT5G60770.1(ATNRT2.4,NRT2.4/LOC_Os02g02170.1)/Q53CL7 | Â | Â | Â | sig. (-3.12) |
GRMZM2G010251 | 4:240243499-240245403 | High affinnity nitrate transporter, uncharacterized protein | AT1G08090.1(ACH1,ATNRT2.1)/LOC_Os02g02170.1/B4FSV9 | Â | Â | Â | sig. (-2.58) |
GRMZM2G089836 | 567508591-67511890 | Glycosyl hydrolase, Invertase | AT1G62660.1/LOC_Os02g01590.1/B6T0A9 | Â | Â | Â | sig. (-2.61) |
GRMZM2G041980 | 5:148304652-148307020 | Putative aquaporin protein, NIP1-1 | AT4G18910.1(ATNLM2,NIP1)/LOC_Os05g11560.1/Q9ATN4 | sig. (3.46) | Â | sig. (-2.41) | Â |
GRMZM2G465226 | 7:3483731-3484794 | Pathogenesis related protein 1 (PR-1), uncharacterized protein | AT5G57625.1: CAP/LOC_Os07g03710.1/B4FVP5 | Â | sig. (3.71) | sig. (1.83) | Â |
GRMZM2G099049 | 7:120764735-120766193 | Auxin/Dormancy related protein | AT1G56220.2/LOC_Os09g26620.1 | Â | Â | Â | sig. (-2.60) |
GRMZM2G336694 | 8:10989824-10990619 | NA | NA | sig. (3.67) | sig. (3.38) | Â | Â |
GRMZM2G153977 | 8:70995815-70998984 | Eukaryotic aspartyl protease | AT1G62290.1/LOC_Os05g49200.1 | Â | sig. (-4.24) | Â | Â |
GRMZM2G096029 | 8:104279085-104281118 | Obtusifoliol 14α demethylase | AT1G11680.1(CYP51)/LOC_Os05g34325.1 |  |  |  | sig. (-2.91) |
GRMZM2G135536 | 10:893975-895713 | Putative cytochrome P450 | AT1G64940.1(CYP89A6)/LOC_Os10g05020.1 | sig. (3.51) | sig. (4.24) | Â | Â |
GRMZM2G133721 | 10:111856375-111861824 | Putative enolase | NA | sig. (7.65) | sig. (6.36) | Â | Â |