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Table 2 Differentially regulated transcripts that co-localize with QTLs for iron efficiency related traits (Benke et al. unpublished)

From: Ups and downs of a transcriptional landscape shape iron deficiency associated chlorosis of the maize inbreds B73 and Mo17

    

QTL@300 μM5

QTL@10 μM6

Gene1

Position2

Function3

UniProtKB/TrEMBL4

Comp. 17

Comp. 2

Comp. 4

Comp. 1

Comp. 2

Comp. 4

GRMZM2G003304

1:218716368-218721179

Uncharacterized protein

B7ZYZ9

   

SP5,SP6

  

GRMZM2G043127

1:253796236-253799897

Uncharacterized protein

B4FCR0

   

RW

  

GRMZM2G027663

1:256566871-256573278

Uncharacterized protein

C0PEH3

SP5

SP5

 

SP5,SP6,RW,SL

SP5,SP6,RW,SL

 

GRMZM2G118821

1:258353072-258355277

Uncharacterized protein

B6U8Z3

SP5,SP6,SDW

SP5,SP6,SDW

 

RW,SL

RW,SL

 

GRMZM2G423972

1:264155924-264160052

NA

NA

   

SDW

 

SDW

GRMZM2G042133

1:265023533-265154204

NA

NA

   

SDW

SDW

 

GRMZM2G127521

1:268343581-268346959

NA

NA

   

SDW

SDW

 

GRMZM2G583462

1:269468231-269469313

Uncharacterized protein

K7UIK7

    

SDW

 

GRMZM2G049790

1:289274299-289275170

Putative uncharacterized protein

B6TNU7

SL

     

GRMZM2G054905

3:191124530-191185971

NA

NA

SP5

SP5

    

GRMZM2G057140

3:191413501-191495940

NA

NA

SP5

SP5

    

GRMZM2G127665

3:196137227-196147905

NA

NA

SP5

     

GRMZM2G574782

4:18676198-18682894

Probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1

B4G0F3

SP6

 

SP6

   

GRMZM2G014902

4:32498151-32531144

Putative MYB DNA-binding domain superfamily protein

K7U156

   

SP5,SP6,SDW

  

GRMZM2G157443

4:37937136-37938763

60S acidic ribosomal protein P1

B4FUB4

   

SP5,SP6,SDW

  

GRMZM2G112792

4:38235714-38238075

Uncharacterized protein

K7U1M0

   

SP5,SP6,SDW

  

GRMZM2G097395

4:44953328-44958944

Nodulin-like protein

K7USY0

SP5

     

GRMZM2G179294

5:180731982-180733210

High-affinity nitrate transport

Q0VH26

   

RW

  

GRMZM2G088469

7:17179983-17182140

Putative uncharacterized protein

B6TKI8

   

SDW

  

GRMZM2G140342

7:121316023-121319306

TMEM87A protein; uncharacterized protein

B4F8U5

SP5

     

GRMZM2G118119

7:121710274-121712960

Uncharacterized protein

K7UXC8

SP5

     

GRMZM2G477325

7:168401561-168403148

Hydrophobic protein LTI6, uncharacterized protein

B4FFP9

SDW

     

GRMZM2G039757

7:168744977-168747272

NA

NA

SDW

     

GRMZM2G047139

8:24719638-24722490

Esterase; uncharacterized protein

B6TZ91

   

RW

  

GRMZM2G154278

8:26066129-26069719

Pre-mRNA-splicing factor cwc15

B6T6R6

   

RW

  

GRMZM2G123143

8:40678211-40682507

Uncharacterized protein

K7VC64

   

RW

  

GRMZM2G061052

8:43287734-43288541

Putative HLH DNA-binding domain superfamily protein; uncharacterized protein

B4FNT9

   

RW

  
  1. 1Gene identifiers as retrieved from http://www.maizesequence.org - reference annotation file ZmB73_5a.
  2. 2Physical positions as retrieved from http://www.maizesequence.org - maize sequence ZmB73_RefGen_v2.
  3. 3Putative function (database information from http://www.maizesequence.org).
  4. 4UniProtKB/TrEMBL accession number.
  5. 5QTL for corresponding trait detected at 300 μM iron regime (Benke et al., unpublished).
  6. 6QTL for corresponding trait detected at 10 μM iron regime (Benke et al., unpublished).
  7. 7Corresponding two-way Comparison in which genes were identified as being significantly (FDR < 0.05) regulated.
  8. QTL abbreviations: SP5 = SPAD of the 5th leaf; SP6 = SPAD of the 6th leaf, RW = root weight; SDW = shoot dry weight; SL = shoot length.
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BMC Plant Biology

ISSN: 1471-2229

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