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Table 4 The ratios of high-temperature cis-nat-siRNAs to normal-temperature ones derived from cis-NATs

From: Global analysis of cis-natural antisense transcripts and their heat-responsive nat-siRNAs in Brassica rapa

cis-NAT Pairs

HT1/NT1

p-value

HT2/NT2

p-value

FR/RR

Putative target genes

Bra018111

Bra018112

0.04

0

0.26

0.000001

0.09

Bra018111

Bra024428

Bra024429

0.04

0

0.17

0.000001

0.00

Bra024428

Bra023553

Bra023554

0.06

0.000018

0.2

0.002686

INF

Bra023554

Bra027167

Bra027168

0.08

0.000427

0.2

0.002686

0.18

Bra027167

Bra013578

Bra013579 (C)

0.31

0.000167

0.14

0.00751

0.05

Bra013578

Bra012677

Bra012676

0.38

0.002245

0.5

0.009327

0.17

Bra012677

Bra030183

Bra030182

2.18

0

2

0

1.93

 

Bra002999

Bra002998 (C)

4.05

0

6.17

0

5.68

Bra002998

Bra000460

Bra000461

4.33

0.004272

2.67

0.004272

0.80

Bra000460

Bra027180

Bra027181 (C)

5.86

0

17

0

0.87

 

Bra040444

Bra040445

11

0.001465

7

0.001465

0.05

Bra040444

Bra018216

Bra018217 (C)

INFa

0

INF

0

247.50

Bra018217

  1. The cis-NAT pair with (C) is conserved in Arabidopsis.
  2. FR: nat-siRNA reads derived from the forward strands.
  3. RR: nat-siRNA reads derived from the reverse strands.
  4. aINF means that the total reads of NT1 or NT2 is 0.