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Table 4 The ratios of high-temperature cis-nat-siRNAs to normal-temperature ones derived from cis-NATs

From: Global analysis of cis-natural antisense transcripts and their heat-responsive nat-siRNAs in Brassica rapa

cis-NAT Pairs HT1/NT1 p-value HT2/NT2 p-value FR/RR Putative target genes
Bra018111 Bra018112 0.04 0 0.26 0.000001 0.09 Bra018111
Bra024428 Bra024429 0.04 0 0.17 0.000001 0.00 Bra024428
Bra023553 Bra023554 0.06 0.000018 0.2 0.002686 INF Bra023554
Bra027167 Bra027168 0.08 0.000427 0.2 0.002686 0.18 Bra027167
Bra013578 Bra013579 (C) 0.31 0.000167 0.14 0.00751 0.05 Bra013578
Bra012677 Bra012676 0.38 0.002245 0.5 0.009327 0.17 Bra012677
Bra030183 Bra030182 2.18 0 2 0 1.93  
Bra002999 Bra002998 (C) 4.05 0 6.17 0 5.68 Bra002998
Bra000460 Bra000461 4.33 0.004272 2.67 0.004272 0.80 Bra000460
Bra027180 Bra027181 (C) 5.86 0 17 0 0.87  
Bra040444 Bra040445 11 0.001465 7 0.001465 0.05 Bra040444
Bra018216 Bra018217 (C) INFa 0 INF 0 247.50 Bra018217
  1. The cis-NAT pair with (C) is conserved in Arabidopsis.
  2. FR: nat-siRNA reads derived from the forward strands.
  3. RR: nat-siRNA reads derived from the reverse strands.
  4. aINF means that the total reads of NT1 or NT2 is 0.
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