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Table 1 Summary of trimming and alignment

From: Transcriptome analysis of embryo maturation in maize

Samples

Raw reads

Trimmed reads

Mapped reads (%, mapped/trimmed)

Uniquely mapped reads (%, unique/trimmed)

Uniquely mapped reads in genes (%, in genes/unique)

S15

22,449,515

20,907,381

16,987,823

4,078,452

2,879,805

(81.3%)

(19.5%)

(70.6%)

S21

19,673,902

18,922,999

14,712,171

3,950,666

2,801,575

(77.7%)

(20.9%)

(70.9%)

S27

14,104,109

13,104,891

11,217,261

2,405,976

1,577,049

(85.6%)

(18.4%)

(65.5%)

Total

56,227,526

52,935,271

42,917,255

10,435,094

7,258,429

 

(81.1%)

(19.7%)

(69.6%)