Characterization and co-expression analysis of WRKY orthologs involved in responses to multiple abiotic stresses in Pak-choi (Brassica campestris ssp. chinensis)

Tang, Jun; Wang, Feng; Wang, Zhen; Huang, Zhinan; Xiong, Aisheng; Hou, Xilin

doi:10.1186/1471-2229-13-188

Table 1 Identification of stress-inducible WRKY genes in Pak-choi

From: Characterization and co-expression analysis of WRKY orthologs involved in responses to multiple abiotic stresses in Pak-choi (Brassica campestris ssp. chinensis)

Gene name	Accession number	CDS (bp)	Size (aa)	Mass (KDa)	pI	Group	Atortholog	NLS locaton	NucPred score	Nuclear localization
BcWRKY1	KF430025	858	285	31.75	7.64	IIa	AtWRKY18	95-98	0.85	Nucl: 13.0
BcWRKY2	KF430026	2067	860	93.24	7.53	I	AtWRKY2	152-170	0.84	Nucl: 14.0
BcWRKY3	KF430027	1428	475	51.92	7.94	I	AtWRKY3		0.86	Nucl: 13.0
BcWRKY4	KF430028	1488	495	53.79	8.01	I	AtWRKY4	339-351	0.89	Nucl: 14.0
BcWRKY6	KF430029	1662	550	60.34	5.94	IIb	AtWRKY6	267-268	0.63	Nucl: 13.0
BcWRKY7	KF430030	1047	348	38.02	10.42	IId	AtWRKY7	253-273	0.82	Nucl: 12.0
BcWRKY8	KF430031	966	379	42.58	7.14	IIc	AtWRKY8	189-226	0.72	Nucl: 13.0
BcWRKY9	KF430032	987	328	37.38	5.55	IIb	AtWRKY9	113-125	0.75	Nucl: 12.5
BcWRKY11	KF430033	999	332	36.37	10.18	IId	AtWRKY11	226-249	0.92	Nucl: 14.0
BcWRKY12	KF430034	657	218	24.62	8.73	IIc	AtWRKY12	112-133	0.49	Nucl: 4.0
BcWRKY13	KF430035	882	293	32.97	9.36	IIc	AtWRKY13	169-201	0.74	Nucl: 13.0
BcWRKY15	KF430036	960	319	34.71	10.40	IId	AtWRKY15	217-237	0.86	Nucl: 11.0
BcWRKY18	KF430037	969	317	35.69	8.32	IIa	AtWRKY18	25-32	0.94	Nucl: 13.0
BcWRKY20	KF430038	1608	535	58.64	6.96	I	AtWRKY20		0.89	Nucl: 14.0
BcWRKY21	KF430039	1020	339	38.04	10.28	IId	AtWRKY21	247-267	0.95	Nucl: 14.0
BcWRKY22	KF430040	897	298	32.34	7.16	IIe	AtWRKY22	101-121	0.66	Nucl: 13.0
BcWRKY23	KF430041	972	323	36.10	6.91	IIc	AtWRKY23	133-152	0.74	Nucl: 13.0
BcWRKY24	KF430042	531	176	20.44	8.62	IIc	AtWRKY24	67-87	0.5	Nucl: 6.0
BcWRKY25	KF430043	1122	373	42.06	6.68	I	AtWRKY25	206-223	0.58	Nucl: 13.0
BcWRKY26	KF430044	894	319	35.94	9.62	I	AtWRKY26	217-230	0.64	Nucl: 12.5
BcWRKY28	KF430045	939	312	34.97	6.72	IIc	AtWRKY28	116-156	0.69	Nucl: 13.0
BcWRKY29	KF430046	927	308	34.17	8.43	IIe	AtWRKY29	108-131	0.55	Nucl: 13.0
BcWRKY30	KF430047	942	313	35.57	6.80	III	AtWRKY30	97-104	0.52	Nucl: 11.5
BcWRKY31	KF430048	1560	519	57.15	6.95	IIb	AtWRKY42	212-217	0.69	Nucl: 14.0
BcWRKY32	KF430049	1899	459	49.58	6.97	I	AtWRKY26	300-311	0.61	Nucl: 11.0
BcWRKY33	KF430050	1557	518	56.63	7.92	I	AtWRKY33		0.77	Nucl: 13.0
BcWRKY34	KF430051	1650	549	60.18	6.47	I	AtWRKY34	19-28	0.78	Nucl: 14.0
BcWRKY36	KF430052	1152	383	42.99	7.69	IIb	AtWRKY36	96-129	0.74	Nucl: 12.0
BcWRKY39	KF430053	1029	342	38.00	10.02	IId	AtWRKY74	247-271	0.9	Nucl: 11.0,
BcWRKY40	KF430054	873	290	32.43	7.82	IIa	AtWRKY40	75-89	0.72	Nucl: 10.0
BcWRKY42	KF430055	1551	519	57.15	6.95	IIb	AtWRKY42	212-217	0.69	Nucl: 14.0
BcWRKY44	KF430056	1230	409	44.89	9.19	I	AtWRKY44	360-364	0.67	Nucl: 8.0
BcWRKY46	KF430057	858	283	32.20	5.82	III	AtWRKY46	60-90	0.73	Nucl: 10.0
BcWRKY47	KF430058	1512	490	53.94	6.79	IIb	AtWRKY47		0.77	Nucl: 13.0
BcWRKY48	KF430059	1200	399	44.46	6.77	IIc	AtWRKY48	185-212	0.69	Nucl: 13.0
BcWRKY51	KF430060	597	198	22.29	7.54	IIc	AtWRKY51	112-129	0.49	Nucl: 12.0
BcWRKY53	KF430061	972	323	36.19	6.38	III	AtWRKY53	127-149	0.81	Nucl: 14.0
BcWRKY54	KF430062	1020	297	33.11	4.76	III	AtWRKY54	107-131	0.8	Nucl: 12.0
BcWRKY56	KF430063	564	186	21.03	7.23	IIc	AtWRKY56	79-89	0.37	Nucl: 9.0
BcWRKY57	KF430064	885	294	32.56	6.89	IIc	AtWRKY57	116-141	0.67	Nucl: 13.0
BcWRKY58	KF430065	3195	1082	119.84	9.63	I	AtWRKY58	865-913	0.96	Nucl: 14.0
BcWRKY59	KF430066	546	196	22.64	6.95	IIc	AtWRKY59	75-97	0.84	Nucl: 5.0
BcWRKY60	KF430067	927	308	34.71	8.22	IIa	AtWRKY18	103-109	0.91	Nucl: 13.0
BcWRKY61	KF430068	1662	398	44.24	6.44	IIb	AtWRKY61		0.66	Nucl: 12.0
BcWRKY62	KF430069	837	233	26.92	6.27	III	AtWRKY62	57-73	0.61	Nucl: 13.0
BcWRKY64	KF430070	777	258	29.36	4.82	III	AtWRKY67	108-117	0.67	Nucl: 11.0
BcWRKY65	KF430071	786	261	29.25	5.27	IIe	AtWRKY65	133-150	0.55	Nucl: 13.0
BcWRKY66	KF430072	738	452	52.12	6.96	III	AtWRKY64	121-138	0.56	Nucl: 8.0
BcWRKY67	KF430073	831	276	31.06	6.79	III	AtWRKY70	92-118	0.81	Nucl: 11.0
BcWRKY68	KF430074	960	319	36.04	6.61	IIc	AtWRKY23	116-145	0.82	Nucl: 13.0
BcWRKY69	KF430075	849	282	31.27	4.69	IIe	AtWRKY69	32-41	0.46	Nucl: 13.0
BcWRKY70	KF430076	852	283	32.01	6.23	III	AtWRKY70	92-117	0.77	Nucl: 12.0
BcWRKY71	KF430077	1047	277	31.53	8.45	IIc	AtWRKY71	99-125	0.46	Nucl: 11.0
BcWRKY72	KF430078	2529	551	59.68	6.36	IIb	AtWRKY72		0.58	Nucl: 14.0
BcWRKY74	KF430079	969	322	35.29	10.45	IId	AtWRKY11	211-244	0.96	Nucl: 13.0
BcWRKY75	KF430080	1062	353	39.33	6.85	IIc	AtWRKY75	143-167	0.73	Nucl: 13.0

Abbreviations: bp, base pair; aa, amino acids; CDS, coding sequence; pI, Isoelectric point; WD, WRKY domain; NLS, Nuclear location signal. NLS location indicated the distribution of the NLSs on the BcWRKY proteins.

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ISSN: 1471-2229

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