Skip to main content

Table 2 LOD scores and percentages of phenotypic variation in CxA and WxBy QTL analyses

From: Fine mapping and identification of a candidate gene for a major locus controlling maturity date in peach

CxA

WxBy

Position (cM)

Locus

LOD

% Expl.

Position (cM)

Locus (c)

LOD 2010/2011

% Expl. 2010/2011

  

2007/2008

2007/2008

    

33.443

UDP96003a*

65.3/67.5

64.4/65.3

34.015

SNP_IGA_410336c****

29.59/32.48

78.7/77.6

34.443

 

71.7/74.1

67.8/68.6

34.015

SNP_IGA_410265c****

29.59/32.48

78.7/77.6

35.443

 

76.1/78.6

70.0/70.8

35.015

 

36.24/37.43

85/82.2

36.443

 

77.8/80.3

70.8/71.6

35.493

SNP_IGA_410398c****

37.92/38.45

86.3/83

36.909

M12aa*

77.6/80.1

70.7/71.5

36.473

SNP_IGA_410478c****

41.47/43.07

88.6/86.2

37.301

S4_09221311c**

80.3/83.5

71.9/73.0

36.961

SNP_IGA_411637c****

43.15/45.41

89.5/87.6

38.301

 

97.7/102.3

78.7/79.8

37.449

MD a ****

47.81/52.85

91.8/91.2

39.301

 

111.5/117.3

82.9/84.1

37.937

SNP_IGA_412338c*****

41.87/49.34

88.8/89.7

40.301

 

117.6/123.7

84.5/85.6

38.937

 

42.12/48.2

89/89.1

40.358

PTP_11b**

117.7/123.8

84.5/85.6

39.937

 

37.29/41.04

85.8/84.9

41.358

 

144.0/152.9

89.8/90.9

40.425

SNP_IGA_413115c******

34.16/37.05

83.3/81.8

41.522

PTP_10b**

144.8/153.5

89.9/91.0

40.912

SNP_IGA_414017c******

31/35.93

80.3/80.9

42.522

 

179.7/176.5

94.2/93.7

41.400

SNP_IGA_415301c*****

28.58/34.91

77.6/80

43.023

PTP_4b**

185.7/178.6

94.7/93.9

41.888

SNP_IGA_415799c****

27.32/33.99

76.1/79.1

43.681

MD a **

231.2/224.1

97.4/97.0

    

44.681

 

194.1/183.1

95.4/94.3

    

45.149

PTP_8b**

166.2/157.4

92.8/91.5

    

45.507

SNP_IGA_415301c*

154.5/146.3

91.3/89.9

    

45.671

PTP_SNP40b**

146.0/137.6

90.1/88.4

    

45.834

PTP_SNP82b**

139.3/131.1

89.0/87.2

    

46.193

EPPISF032a*

148.6/139.5

90.5/88.8

    
  1. The highest LOD and percentage of phenotypic variation are indicated in bold with the nearest marker. Positions are indicated in cM (centiMorgan). (a) Markers from Eduardo et al. [10], (b) newly developed markers, (c) markers from Verde et al. [17]. Significance levels of locus-genotype frequencies: *:0.1 **:0.05 ***:0.01 ****:0.005 *****:0.001 ******:0.0005 *******:0.0001.