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Table 2 Markers developed to map the qMrdd1 locus

From: Identification and fine-mapping of a QTL, qMrdd1, that confers recessive resistance to maize rough dwarf disease

Name

Chr.

Location (Mb)

Forward primer

Reverse primer

Annealing temp. (°C)

Type

M103-1

8

103.18

AGAGGAGGCTTAGATGCGGT

TTGAAAAAAAGGCATAGGCT

60

SSR

M103-4

8

103.93

CACTCTCATCCTCTCGCACC

ATCTAATCACAGCGCGCAAG

60

STS

M103-7#

8

104.17

AACGAGGTGCAGCTGCTGTA

CCAGACTAGCTAGAACGCCA

60

SSR

M104-3

8

104.82

TAGAGGATCCGACGGCGT

TGCTAGCACTCGATGAGGAA

58

STS

M105-3

8

105.12

GTCGTCGAGTTGGTCTGGAC

TGGTCAGAGGAGAGCTAGCA

60

SSR

M106-15

8

106.63

AACAAGACGGAAGCGACCA

CATGTTGTACGCCAGCTTGA

60

SSR

M108-1

8

108.18

CAATGCTGTCCGTCAATGTC

GACATCTCGTCGATAGGCCA

60

SSR

M109-12

8

109.95

GTACGTTCGTGCACACCACA

GAACGGCACCGCATGATT

60

SSR

M112-5

8

112.05

ATGATGTGCCTGGACCAGAG

CCTAAGATTGCCTTGCTCG

60

SSR

M113-2

8

113.28

AACACAAGCGAGGAGACGAA

ACGATGACGACAATGGCAAG

60

SSR

M113-6

8

113.90

ACGTCTGTCTGTGGAGTTGG

AGCAGCCTGGCAATGTTAGT

60

SSR

M114-2

8

114.19

CGTCGAGTTCGCCTTCATC

GGTCACTACAAGGTCCTCGG

60

SSR

M114-3

8

114.43

GGCATTATCGTCCTGACTGA

TAGCACACATAGCGACATGG

60

SSR

M115-5

8

115.68

CTAATTCGTGATGGTCTCGG

AATGACGGAATGGCAGCCTA

60

SSR

M117-2

8

117.15

ACCTGTTCATGTTCCACACG

AATGACGAGGACGGATTACC

60

SSR

M117-5

8

117.76

GTTCCTTGTGCTTCTGGTTG

AATCTCTCTAGCTCGTCCTCTG

60

SSR

M118-3

8

118.17

GGTCAACGCCATCCATAACT

CTTGCTCGTGTCGTCCTTGT

60

SSR

C1-3*

1

33.80

CTATCTCTCTCCCTGCGTGC

GTGACGCCTATAACCTTCCG

60

SSR

C1-25*

1

34.89

GTAGGCTCGTTCGCAAAAAA

AGAGTTAAGCCGGCTATCCA

60

SSR

C3-1*

3

213.80

CCAAGGACGCAATCTAATCG

GTCATGGACATCGTGCTGTT

60

SSR

C3-5*

3

214.37

GGACAGAGCAGGTGATGTTG

GGATTCGCGGACAGTTGAAG

60

SSR

C5-5*

5

17.38

GAGGTTCCACCAGTGTGCAG

ACTTCGTCCGTCCTTCCTCT

60

SSR

C5-24*

5

18.28

GGATCGGAGGAGCCTGTTAA

TCTGTCTCTTGCGTGTGTGA

60

SSR

C9-2*

9

153.51

TGGAGGACTTGATGTTGAGG

CTCGATGCAGTTGCTTCTGT

60

SSR

C9-19*

9

153.62

CGCAGGACATGAGGTACACC

GCTACTCCAGTTACCAGGCA

60

SSR

  1. *Markers used for validation in BC1F2 and BC2F1 segregating populations. #Markers used for validation in a RIL population. Location corresponds to maize B73 reference genome APGv2.