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Table 4 Twenty most differentially expressed genes with higher expression in CSS stage relative to MGR stage

From: Transcriptional programming during cell wall maturation in the expanding Arabidopsis stem

Accession

Gene annotation1

MGR/CSS Fold-change2

q-value3

AT5G25110

CBL-INTERACTING PROTEIN KINASE 25 (CIPK25)(SnRK3.25)

−5.1

1.8E-02

AT2G43050

pectin methylesterase

−5.5

2.8E-03

AT4G30290

XYLOGLUCAN ENDOTRANSGLUCOSYLASE (XTH19)

−5.5

2.8E-04

AT5G59290

UDP-glucuronic acid decarboxylase 3 (UXS3)

−5.6

5.8E-04

AT2G38080

LACCASE 4 (IRX12)

−6.0

4.1E-04

AT2G37090

IRREGULAR XYLEM 9 (IRX9)

−6.1

4.3E-04

AT5G46340

REDUCED WALL ACETYLATION 1 (RWA1)

−6.1

3.0E-03

AT1G03740

S/T protein kinase

−6.1

7.8E-06

AT5G01360

TRICHOME BIREFRINGENCE-LIKE 3 (TBL3)

−6.9

2.3E-03

AT2G28315

Nucleotide/sugar transporter family protein

−7.3

4.0E-03

AT1G22480

plastocyanin-like domain-containing protein

−7.8

3.6E-04

AT5G17420

CESA7(IRX3)

−8.8

1.6E-04

AT3G18660

glucuronic acid substitution of xylan1 (GUX1)

−9.0

5.7E-04

AT4G18780

CESA8 (IRX1)

−9.5

9.4E-04

AT3G16920

CHITINASE-LIKE PROTEIN 2 (CTL2)

−10.1

1.3E-05

AT2G28110

FRAGILE FIBER 8 (FRA8)

−10.3

4.8E-04

AT2G03200

aspartyl protease family protein

−10.4

9.6E-05

AT1G63910

AtMYB103

−11.5

2.3E-03

AT5G44030

CESA4 (IRX5)

−11.5

5.6E-05

AT2G45220

pectin methylesterase

−38.4

1.8E-05

  1. 1Gene descriptions are abbreviated from TAIR10 genome release. Putative functions are stated in lowercase.
  2. 2Genes ranked according to fold-change values derived from log2 ratios of MGR (numerator) and CSS (denominator).
  3. 3 Derived from false discovery-rate correction of p-values.