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Table 2 Genes and miRNAs grouped into significant cluster profiles by STEM analysis

From: Next-generation sequencing-based mRNA and microRNA expression profiling analysis revealed pathways involved in the rapid growth of developing culms in Moso bamboo

Profile model

Num. Genes Expected

Num. Genes Assigned

P-Value

mRNA

   

Development-specific genes

   

Profile 9 (0,-1,-2,-3)

177

85.7

1.50E-18

Profile 42 (0,1,2,3)

177

85.7

1.50E-18

Profile 18 (0,-1,0,2)

109.5

74.1

4.90E-05

Profile 34 (0,1,0,-2)

164

89.5

5.70E-13

Profile 21 (0,-1,1,1)

157

95.6

3.40E-09

Profile 31 (0,1,-1,-1)

179

85.3

2.10E-19

Profile 22 (0,0,-2,-1)

251

95.6

3.50E-41

Profile 30 (0,0,2,1)

148

85.3

3.00E-10

Profile 23 (0,0,-1,-1)

371

134.8

5.70E-66

Profile 29 (0,0,1,1)

298

134.8

2.00E-35

Profile 40 (0,1,1,3)

94.5

57.6

3.40E-06

Internode-specific genes

   

Profile 2 (0,-1,-3)

171

128.8

1.60E-04

Profile 12 (0,1,2)

226

92.7

4.70E-33

Profile 13 (0,1,3)

237

108.8

8.90E-28

Profile 15 (0,2,3)

239

128.8

3.10E-19

Profile 7 (0,0,-1)

304

231.7

1.20E-06

Profile 11 (0,1,1)

284

231.7

2.80E-04

miRNA

   

Development-specific miRNAs

   

Profile model

Num. miRNA Expected

Num. miRNA Assigned

P-Value

Profile 4 (0,-1,-2,-3)

27

13.5

6.50E-04

Profile 17 (0,0,2,1)

28

13.3

2.40E-04

Profile 18 (0,1,-1,-1)

25

13.3

2.40E-03

Profile 25 (0,1,2,3)

24

13.5

5.50E-03

Internode-specific miRNAs

   

Profile 4 (0,-1,-1)

130

101.3

1.20E-03